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SOaAS
dbxref
Commits
1c7b3d07
Commit
1c7b3d07
authored
Feb 12, 2020
by
Jan Keller
Browse files
Added ressources for Gene Identifier Retriever
parent
7ca256b9
Changes
1
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dbxref/providers.yaml
View file @
1c7b3d07
...
...
@@ -24,12 +24,11 @@
resources
:
html
:
[
"
https://www.ncbi.nlm.nih.gov/protein/GI:%i"
]
xml
:
[
"
http://www.ncbi.nlm.nih.gov/sviewer/viewer.cgi?tool=portal&db=protein&dopt=xml&sort=&val=%i&retmode=file"
]
# does not work
# check_existence: "http://www.ncbi.nlm.nih.gov/sviewer/viewer.cgi?tool=portal&db=protein&dopt=xml&sort=&val=%i&retmode=file"
-
name
:
Conserved domain database
prefixes
:
[
"
CDD"
]
resources
:
html
:
[
"
https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%i"
]
text
:
[
"
https://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?noredirect=1&db=protein&val=%i"
]
check_existence
:
"
http://www.ncbi.nlm.nih.gov/sviewer/viewer.cgi?tool=portal&db=protein&dopt=xml&sort=&val=%i&retmode=file"
retriever
:
type
:
'
internal'
location
:
'
dbxref.retrieve.gi'
-
name
:
Uniprot
prefixes
:
[
"
UniProtKB/TrEMBL"
,
"
UniProtKB/Swiss-Prot"
]
resources
:
...
...
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