Commit 3d7ce949 authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Update changelog and cleanup unneeded directory

parent a87e5221
[0.1]
Implement basic structure
Integrate several databases
import sys
import os
# append module root directory to sys.path
sys.path.append(
os.path.dirname(
os.path.dirname(
os.path.abspath(__file__)
)
)
)
enzyme:
"definition": {"cofactors": ["", ...], "comments": ["", ...], "reaction_catalysed": ["", ...]}
"id": ""
"name": ""
"synonyms": ["", ...]
"uniprot": ["", ...]
--basic:
"definition": {"cofactors": ["", ...], "comments": ["", ...], "reaction_catalysed": ["", ...]}
"id": ""
"name": ""
"synonyms": ["", ...]
--references:
"id": ""
"uniprot": ["", ...]
gene ontology:
"definition": ""
"id": ""
"name": ""
"relations": {"children": [{"id": "", "type": ""}, ...], "parents": [{"id": "", "type": ""}, ...]}
"synonyms": [{"name": "", "type": ""}, ...]
--basic:
"definition": ""
"id": ""
"name": ""
"synonyms": [{"name": "", "type": ""}, ...]
--relations:
"id": ""
"relations": {"children": [{"id": "", "type": ""}, ...], "parents": [{"id": "", "type": ""}, ...]}
pfam:
"accession": ""
"comment": ""
"dbxref": ""
"description": ""
"id": ""
"terms": [{"description": "", "id": ""}, ...]
--basic:
"dbxref": ""
"description": ""
--annotation:
"accession": ""
"comment": ""
"dbxref": ""
"id": ""
"terms": [{"description": "", "id": ""}, ...]
sequence ontology:
"definition": ""
"id": ""
"name": ""
"namespace": ""
"relations: {"children": ["", ...], "parents": ["", ...]}
"synonyms": [{"name": "", "type": ""}, ...]
--basic:
"definition": ""
"id": ""
"name": ""
"namespace": ""
"synonyms": [{"name": "", "type": ""}, ...]
--relations:
"id": ""
"relations: {"children": ["", ...], "parents": ["", ...]}
uniprot:
"acessions": ["", ...]
"alternative_names": ["", ...]
"dbxrefs": ["", ...]
"description": ""
"id": ""
"keywords": ["", ...]
"organism": ""
"recommended_name": {"full": ""}
"sequence": ""
--basic:
"description": ""
"id": ""
--sequence:
"id": ""
"sequence": ""
--organism:
"id": ""
"organism": ""
--annotation:
"acessions": ["", ...]
"alternative_names": ["", ...]
"dbxrefs": ["", ...]
"id": ""
"keywords": ["", ...]
"recommended_name": {"full": ""}
--features:
"id": ""
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