Commit 5e01d10d authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Add uniref, uniparc, refseq-html and cog

parent 5069c8cd
...@@ -37,10 +37,29 @@ ...@@ -37,10 +37,29 @@
resources: resources:
html: [ "http://www.uniprot.org/uniprot/%i"] html: [ "http://www.uniprot.org/uniprot/%i"]
xml: [ "http://www.uniprot.org/uniprot/%i.xml"] xml: [ "http://www.uniprot.org/uniprot/%i.xml"]
json: [ "http://www.uniprot.org/uniprot/%i.json"]
check_existence: "http://www.uniprot.org/uniprot/%i.xml" check_existence: "http://www.uniprot.org/uniprot/%i.xml"
retriever: retriever:
type: 'internal' type: 'internal'
location: 'dbxref.retrieve.uniprot' location: 'dbxref.retrieve.uniprot'
- name: UniRef
prefixes: ["UniRef", "UniRef100", "UniRef90", "UniRef50"]
resources:
html: [ "http://www.uniprot.org/uniref/%i"]
xml: [ "http://www.uniprot.org/uniref/%i.xml"]
json: [ "http://www.uniprot.org/uniref/%i.json"]
check_existence: "http://www.uniprot.org/uniref/%i.xml"
- name: COG
prefixes: ["COG"]
resources:
html: ["https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%i"]
- name: UniParc
prefixes: ["UniParc"]
resources:
html: [ "http://www.uniprot.org/uniparc/%i"]
xml: [ "http://www.uniprot.org/uniparc/%i.xml"]
json: [ "http://www.uniprot.org/uniparc/%i.json"]
check_existence: "http://www.uniprot.org/uniparc/%i.xml"
- name: Taxonomy - name: Taxonomy
prefixes: ["Taxon", "taxid"] prefixes: ["Taxon", "taxid"]
resources: resources:
...@@ -148,6 +167,7 @@ ...@@ -148,6 +167,7 @@
- name: RefSeq - name: RefSeq
prefixes: ['RefSeq'] prefixes: ['RefSeq']
resources: resources:
html: ["https://www.ncbi.nlm.nih.gov/protein/%i/"]
xml: ["https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&term=srcdb_refseq[property]&id=%i&retmode=xml", xml: ["https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&term=srcdb_refseq[property]&id=%i&retmode=xml",
"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=protein&term=srcdb_refseq[property]&id=%i&retmode=xml"] "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=protein&term=srcdb_refseq[property]&id=%i&retmode=xml"]
retriever: retriever:
......
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