Begun to implement retriever for InterPro

dbxref/retrieve/interpro.py

@@ -9,3 +9,33 @@ import argparse
 logger = logging.getLogger(__name__)
 
 def main():
+    """main()method for script usage"""
+    parser = argparse.ArgumentParser(description="Retrieve InterPro documents and convert them into json")
+    parser.add_argument("dbxrefs", nargs=argparse.REMAINDER)
+    args = parser.parse_args()
+
+    dbxrefs = dbxref.resolver.convert_to_dbxrefs(args.dbxrefs)
+    documents = retrieve(dbxrefs)
+    print(documents)
+
+
+def retrieve(dbxrefs):
+    """Insert description here"""
+    print(dbxrefs)
+    resolved = dbxref.resolver.resolve(dbxrefs, check_existence=False)
+    print(resolved)
+    documents = []
+    for entry in resolved:
+        print(entry)
+        html_url = entry['locations']['html'][0]
+        logger.debug('URL: %s', html_url)
+        r = requests.get(html_url)
+        logger.debug('Content: %s', r.text)
+        lines = json.loads(r.text)
+        for line in lines:
+            print(line)
+    return documents
+
+
+if __name__ == "__main__":
+    main()