Skip to content
GitLab
Menu
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
SOaAS
dbxref
Commits
fbe92917
Commit
fbe92917
authored
Jan 17, 2018
by
Lukas Jelonek
Browse files
Refactor documentation to remove source directory
parent
d64ebcc6
Changes
10
Show whitespace changes
Inline
Side-by-side
docs/Makefile
View file @
fbe92917
...
...
@@ -4,7 +4,7 @@
# You can set these variables from the command line.
SPHINXOPTS
=
SPHINXBUILD
=
sphinx-build
SPHINXPROJ
=
DBXRefresolveandretrievaltool
SPHINXPROJ
=
dbxref
SOURCEDIR
=
.
BUILDDIR
=
_build
...
...
docs/
source/
conf.py
→
docs/conf.py
View file @
fbe92917
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
#
DBXRef resolve and retrieval tool
documentation build configuration file, created by
# sphinx-quickstart on Wed
Aug 2 11:31:57
201
7
.
#
dbxref
documentation build configuration file, created by
# sphinx-quickstart on Wed
Jan 17 15:36:15
201
8
.
#
# This file is execfile()d with the current directory set to its
# containing dir.
...
...
@@ -31,8 +31,7 @@
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions
=
[
'sphinx.ext.autodoc'
,
'sphinx.ext.todo'
]
extensions
=
[
'sphinx.ext.autodoc'
,
'sphinx.ext.todo'
]
# Add any paths that contain templates here, relative to this directory.
templates_path
=
[
'_templates'
]
...
...
@@ -48,7 +47,7 @@ master_doc = 'index'
# General information about the project.
project
=
'DBXRef resolve and retrieval tool'
copyright
=
'201
7
, Lukas Jelonek'
copyright
=
'201
8
, Lukas Jelonek'
author
=
'Lukas Jelonek'
# The version info for the project you're documenting, acts as replacement for
...
...
@@ -56,9 +55,9 @@ author = 'Lukas Jelonek'
# built documents.
#
# The short X.Y version.
version
=
'0.1'
version
=
'0.1
.0
'
# The full version, including alpha/beta/rc tags.
release
=
'0.1'
release
=
'0.1
.0
'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
...
...
@@ -97,11 +96,26 @@ html_theme = 'sphinx_rtd_theme'
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path
=
[
'_static'
]
# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# This is required for the alabaster theme
# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
html_sidebars
=
{
'**'
:
[
'about.html'
,
'navigation.html'
,
'relations.html'
,
# needs 'show_related': True theme option to display
'searchbox.html'
,
'donate.html'
,
]
}
# -- Options for HTMLHelp output ------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename
=
'
DBXRefresolveandretrievaltool
doc'
htmlhelp_basename
=
'
dbxref
doc'
# -- Options for LaTeX output ---------------------------------------------
...
...
@@ -128,7 +142,7 @@ latex_elements = {
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents
=
[
(
master_doc
,
'
DBXRefresolveandretrievaltool.tex'
,
'DBXRef resolve and retrieval tool
Documentation'
,
(
master_doc
,
'
dbxref.tex'
,
'dbxref
Documentation'
,
'Lukas Jelonek'
,
'manual'
),
]
...
...
@@ -138,7 +152,7 @@ latex_documents = [
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages
=
[
(
master_doc
,
'dbxref
resolveandretrievaltool'
,
'DBXRef resolve and retrieval tool
Documentation'
,
(
master_doc
,
'dbxref
'
,
'dbxref
Documentation'
,
[
author
],
1
)
]
...
...
@@ -149,8 +163,8 @@ man_pages = [
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents
=
[
(
master_doc
,
'
DBXRefresolveandretrievaltool'
,
'DBXRef resolve and retrieval tool
Documentation'
,
author
,
'
DBXRefresolveandretrievaltool
'
,
'One line description of project.'
,
(
master_doc
,
'
dbxref'
,
'dbxref
Documentation'
,
author
,
'
dbxref
'
,
'One line description of project.'
,
'Miscellaneous'
),
]
...
...
docs/
source/
enzymes.rst
→
docs/enzymes.rst
View file @
fbe92917
File moved
docs/
source/
gene_ontology.rst
→
docs/gene_ontology.rst
View file @
fbe92917
File moved
docs/
source/
index.rst
→
docs/index.rst
View file @
fbe92917
File moved
docs/make.bat
View file @
fbe92917
...
...
@@ -9,7 +9,7 @@ if "%SPHINXBUILD%" == "" (
)
set
SOURCEDIR
=
.
set
BUILDDIR
=
_build
set
SPHINXPROJ
=
DBXRefresolveandretrievaltool
set
SPHINXPROJ
=
dbxref
if
"
%
1"
==
""
goto
help
...
...
docs/
source/
pfam.rst
→
docs/pfam.rst
View file @
fbe92917
File moved
docs/
source/
sequence_ontology.rst
→
docs/sequence_ontology.rst
View file @
fbe92917
File moved
docs/
source/
taxonomy.rst
→
docs/taxonomy.rst
View file @
fbe92917
File moved
docs/
source/
uniprot.rst
→
docs/uniprot.rst
View file @
fbe92917
File moved
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment