Commits · 44765088c4bf68753e88fd98ab789705b470bcf0 · SOaAS / dbxref · GitLab

25 Apr, 2019 1 commit
- Add kegg to providers · 44765088
  Lukas Jelonek authored Apr 25, 2019
  
  44765088
24 Apr, 2019 8 commits
- Add aspect to gene ontology retrieval · febdcc70
  Lukas Jelonek authored Apr 24, 2019
  
  febdcc70
- Fix error in test · bb706739
  Lukas Jelonek authored Apr 24, 2019
  
  bb706739
- Fix bug: Enzyme category conversion with dashes includes html source in message field · 99deb8f5
  Lukas Jelonek authored Apr 24, 2019
  
  99deb8f5
- Fix bug: Retrieval of providers without retriever causes exception · 588e5cef
  Lukas Jelonek authored Apr 24, 2019
  
  588e5cef
- Fix bug: ec number retriever uses dbxref instead of id for identity field · 2a28e3c3
  Lukas Jelonek authored Apr 24, 2019
  
  2a28e3c3
- Fix bug: expiration time to low · 95aadf02
  Lukas Jelonek authored Apr 24, 2019
  
  95aadf02
- Add cache for entries · 730fd9f0
  Lukas Jelonek authored Apr 24, 2019
  
  730fd9f0
- Fix bug: Gene ontology retrieval causes exception if the id does not exists in... · cdd8d6fe
  Lukas Jelonek authored Apr 24, 2019
```
Fix bug: Gene ontology retrieval causes exception if the id does not exists in the database, but has valid format
```
  cdd8d6fe
23 Apr, 2019 2 commits
- Add draft of developer guide · adb9a895
  Lukas Jelonek authored Apr 23, 2019
  
  adb9a895
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/dbxref into develop · 2f8ada3d
  Lukas Jelonek authored Apr 23, 2019
  
  2f8ada3d
11 Apr, 2019 1 commit
- Add gitlab ci process · 78c30f57
  Lukas Jelonek authored Apr 11, 2019
  
  78c30f57
14 Mar, 2019 3 commits
- Fix warning that yaml load requires loader · 03063e76
  Lukas Jelonek authored Mar 14, 2019
  
  03063e76
- Fix warning that yaml load requires loader · 6877e873
  Lukas Jelonek authored Mar 14, 2019
  
  6877e873
- Add authors · ece359fb
  Lukas Jelonek authored Mar 14, 2019
  
  ece359fb
07 Mar, 2019 2 commits
- Update: Update GI provider to use https · d9908728
  Lukas Jelonek authored Mar 07, 2019
  
  d9908728
- Fix bug: Uniprot provider kills application on illegal dbxref · 97be4aa9
  Lukas Jelonek authored Mar 07, 2019
  
  97be4aa9
11 Apr, 2018 1 commit
- Add logging of document when exception occurs for uniprot retriever · 67b5e53f
  Lukas Jelonek authored Apr 11, 2018
  
  67b5e53f
10 Apr, 2018 2 commits
- Add logging of any exception for uniprot retriever · 269a7236
  Lukas Jelonek authored Apr 10, 2018
  
  269a7236
- Remove logging of exception at wrong place · f0390dc0
  Lukas Jelonek authored Apr 10, 2018
  
  f0390dc0
09 Apr, 2018 4 commits
- Fix bug: Entry without comments causes exceptions · 6bb1c8a1
  Lukas Jelonek authored Apr 09, 2018
  
  6bb1c8a1
- Add parser reporting to pfam retriever · 563015e3
  Lukas Jelonek authored Apr 09, 2018
  
  563015e3
- Report dbxrefs with AttributeErrors · 991a74e5
  Lukas Jelonek authored Apr 09, 2018
  
  991a74e5
- Fix bug: uniprot handler has problems with position tag · 51f84a07
  Lukas Jelonek authored Apr 09, 2018
  
  51f84a07
24 Jan, 2018 2 commits
- Fix bug: Pfam retriever crashes when no go_terms are available (fixes #20) · f05f4c7f
  Lukas Jelonek authored Jan 24, 2018
  
  f05f4c7f
- Log list dbxrefs that can not be retrieved · 1b03797b
  Lukas Jelonek authored Jan 24, 2018
  
  1b03797b
23 Jan, 2018 10 commits
- Merge branch 'develop' into 'master' · a12602d6
  Lukas Jelonek authored Jan 23, 2018
```
Develop

See merge request SOaAS/dbxref!3
```
  a12602d6
- Convert readme to rst. Add licence to setup.cfg · 2733b102
  Lukas Jelonek authored Jan 23, 2018
  
  2733b102
- Fix bug: info command lists some providers multiple times · 6dd71f50
  Lukas Jelonek authored Jan 23, 2018
  
  6dd71f50
- Include development snapshot to version string · a7a6c443
  Lukas Jelonek authored Jan 23, 2018
  
  a7a6c443
- Implement info of supported dbxref providers #1 · 73b58119
  Lukas Jelonek authored Jan 23, 2018
  
  73b58119
- Update build system to use pbr · 2ded2211
  Lukas Jelonek authored Jan 23, 2018
  
  2ded2211
- Merge branch 'develop' into 'master' · 941bb534
  Lukas Jelonek authored Jan 23, 2018
```
Develop

See merge request SOaAS/dbxref!2
```
  941bb534
- Update changelog and cleanup unneeded directory · 3d7ce949
  Lukas Jelonek authored Jan 23, 2018
  
  3d7ce949
- Add check to test if the generated urls return valid exit codes · a87e5221
  Lukas Jelonek authored Jan 23, 2018
  
  a87e5221
- Fix bug: #12 case sensitivity causes problems with retrievers · 8eda5c8f
  Lukas Jelonek authored Jan 23, 2018
  
  8eda5c8f
22 Jan, 2018 4 commits
- Fix bug: Taxonomy retrieves lineage as a string with a list instead of a list of strings · e55f7b34
  Lukas Jelonek authored Jan 22, 2018
  
  e55f7b34
- Refactor gene ontology retriever into an internal retriever · 8e3b1456
  Lukas Jelonek authored Jan 22, 2018
  
  8e3b1456
- Refactor sequence ontology retriever into an internal retriever · bb6b8a52
  Lukas Jelonek authored Jan 22, 2018
  
  bb6b8a52
- Remove already internalized script · 378ccb53
  Lukas Jelonek authored Jan 22, 2018
  
  378ccb53