Commits · 6877e8733a869831f51b095d5e2a11d7497876f8 · SOaAS / dbxref · GitLab

14 Mar, 2019 2 commits
- Fix warning that yaml load requires loader · 6877e873
  Lukas Jelonek authored Mar 14, 2019
  
  6877e873
- Add authors · ece359fb
  Lukas Jelonek authored Mar 14, 2019
  
  ece359fb
07 Mar, 2019 2 commits
- Update: Update GI provider to use https · d9908728
  Lukas Jelonek authored Mar 07, 2019
  
  d9908728
- Fix bug: Uniprot provider kills application on illegal dbxref · 97be4aa9
  Lukas Jelonek authored Mar 07, 2019
  
  97be4aa9
11 Apr, 2018 1 commit
- Add logging of document when exception occurs for uniprot retriever · 67b5e53f
  Lukas Jelonek authored Apr 11, 2018
  
  67b5e53f
10 Apr, 2018 2 commits
- Add logging of any exception for uniprot retriever · 269a7236
  Lukas Jelonek authored Apr 10, 2018
  
  269a7236
- Remove logging of exception at wrong place · f0390dc0
  Lukas Jelonek authored Apr 10, 2018
  
  f0390dc0
09 Apr, 2018 4 commits
- Fix bug: Entry without comments causes exceptions · 6bb1c8a1
  Lukas Jelonek authored Apr 09, 2018
  
  6bb1c8a1
- Add parser reporting to pfam retriever · 563015e3
  Lukas Jelonek authored Apr 09, 2018
  
  563015e3
- Report dbxrefs with AttributeErrors · 991a74e5
  Lukas Jelonek authored Apr 09, 2018
  
  991a74e5
- Fix bug: uniprot handler has problems with position tag · 51f84a07
  Lukas Jelonek authored Apr 09, 2018
  
  51f84a07
24 Jan, 2018 2 commits
- Fix bug: Pfam retriever crashes when no go_terms are available (fixes #20) · f05f4c7f
  Lukas Jelonek authored Jan 24, 2018
  
  f05f4c7f
- Log list dbxrefs that can not be retrieved · 1b03797b
  Lukas Jelonek authored Jan 24, 2018
  
  1b03797b
23 Jan, 2018 10 commits
- Merge branch 'develop' into 'master' · a12602d6
  Lukas Jelonek authored Jan 23, 2018
```
Develop

See merge request SOaAS/dbxref!3
```
  a12602d6
- Convert readme to rst. Add licence to setup.cfg · 2733b102
  Lukas Jelonek authored Jan 23, 2018
  
  2733b102
- Fix bug: info command lists some providers multiple times · 6dd71f50
  Lukas Jelonek authored Jan 23, 2018
  
  6dd71f50
- Include development snapshot to version string · a7a6c443
  Lukas Jelonek authored Jan 23, 2018
  
  a7a6c443
- Implement info of supported dbxref providers #1 · 73b58119
  Lukas Jelonek authored Jan 23, 2018
  
  73b58119
- Update build system to use pbr · 2ded2211
  Lukas Jelonek authored Jan 23, 2018
  
  2ded2211
- Merge branch 'develop' into 'master' · 941bb534
  Lukas Jelonek authored Jan 23, 2018
```
Develop

See merge request SOaAS/dbxref!2
```
  941bb534
- Update changelog and cleanup unneeded directory · 3d7ce949
  Lukas Jelonek authored Jan 23, 2018
  
  3d7ce949
- Add check to test if the generated urls return valid exit codes · a87e5221
  Lukas Jelonek authored Jan 23, 2018
  
  a87e5221
- Fix bug: #12 case sensitivity causes problems with retrievers · 8eda5c8f
  Lukas Jelonek authored Jan 23, 2018
  
  8eda5c8f
22 Jan, 2018 9 commits
- Fix bug: Taxonomy retrieves lineage as a string with a list instead of a list of strings · e55f7b34
  Lukas Jelonek authored Jan 22, 2018
  
  e55f7b34
- Refactor gene ontology retriever into an internal retriever · 8e3b1456
  Lukas Jelonek authored Jan 22, 2018
  
  8e3b1456
- Refactor sequence ontology retriever into an internal retriever · bb6b8a52
  Lukas Jelonek authored Jan 22, 2018
  
  bb6b8a52
- Remove already internalized script · 378ccb53
  Lukas Jelonek authored Jan 22, 2018
  
  378ccb53
- Refactor uniprot retriever into an internal retriever · f3016313
  Lukas Jelonek authored Jan 22, 2018
  
  f3016313
- Refactor pfam retriever into an internal retriever · 7d9e42bf
  Lukas Jelonek authored Jan 22, 2018
  
  7d9e42bf
- Refactor enzyme retriever into an internal retriever · 2759afc2
  Lukas Jelonek authored Jan 22, 2018
  
  2759afc2
- Add documentation about testing and documentation building to readme · 6c023713
  Lukas Jelonek authored Jan 22, 2018
  
  6c023713
- Remove env.py from tests · e5f81e4f
  Lukas Jelonek authored Jan 22, 2018
  
  e5f81e4f
17 Jan, 2018 6 commits
- Refactor: remove print statement from retriever. Remove location variable · c2e00d1a
  Lukas Jelonek authored Jan 17, 2018
  
  c2e00d1a
- Introduce internal providers that run in the python process, instead in a... · 87c46362
  Lukas Jelonek authored Jan 17, 2018
```
Introduce internal providers that run in the python process, instead in a forked process. Converted the taxonomy provider as a proof of principle
```
  87c46362
- Refactor string handling into main method, away from resolve and retrieve · 9b702154
  Lukas Jelonek authored Jan 17, 2018
  
  9b702154
- Fix bug: Typo 'deifinition' · 24b3c3d5
  Lukas Jelonek authored Jan 17, 2018
  
  24b3c3d5
- Refactor documentation to remove source directory · fbe92917
  Lukas Jelonek authored Jan 17, 2018
  
  fbe92917
- Refactor project such that it can be build and deployed via pip · d64ebcc6
  Lukas Jelonek authored Jan 17, 2018
  
  d64ebcc6
12 Dec, 2017 2 commits
- added taxonomy to documentation · 8e6a7f70
  lmueller authored Dec 12, 2017
  
  8e6a7f70
- switched from ncbi to ebi for taxonomy retriever · d60fa151
  lmueller authored Dec 12, 2017
  
  d60fa151