Commits · 81d659773decabab4e08141f70932f17dae63db6 · SOaAS / dbxref

27 Feb, 2020 4 commits
- Merge branch 'features/kegg' into 'develop' · 81d65977
  Lukas Jelonek authored Feb 27, 2020
```
Features/kegg

See merge request SOaAS/dbxref!4
```
  81d65977
- Replace alpine ci image with buster, due to problems with lxml compilation · 6f75cb24
  Lukas Jelonek authored Feb 27, 2020
  
  6f75cb24
- Register kegg provider, set default parameters, replace print statements with logging · 052806cd
  Lukas Jelonek authored Feb 27, 2020
  
  052806cd
- Remove wrong kegg prefix · 08c2504f
  Lukas Jelonek authored Feb 27, 2020
  
  08c2504f
13 Feb, 2020 9 commits
- Update providers.yaml · ac92b6b2
  jkeller authored Feb 13, 2020
  
  ac92b6b2
- Delete test_rfam.py · 07893a78
  jkeller authored Feb 13, 2020
```
Accidenntly pushed to wrong branch
```
  07893a78
- Delete rfam.rst · e649c391
  jkeller authored Feb 13, 2020
  
  e649c391
- Delete rfam.py · c589fd8c
  jkeller authored Feb 13, 2020
```
Accidently pushed to wrong branch
```
  c589fd8c
- Complete ressources for Rfam Retriever · def348c5
  jkeller authored Feb 13, 2020
  
  def348c5
- Unittest for Rfam Retriever · 9a7c7c96
  jkeller authored Feb 13, 2020
  
  9a7c7c96
- Documentation for Rfam Retriever · d2e7b760
  jkeller authored Feb 13, 2020
  
  d2e7b760
- Retriever for Rfam · 827ea286
  jkeller authored Feb 13, 2020
  
  827ea286
- Added ressources for Rfam retriever · 3a4749ed
  jkeller authored Feb 13, 2020
  
  3a4749ed
06 Feb, 2020 2 commits
- Update test_kegg.py · 68a2c688
  jkeller authored Feb 06, 2020
  
  68a2c688
- Update test_kegg.py · 7554da32
  jkeller authored Feb 06, 2020
  
  7554da32
03 Feb, 2020 8 commits
- Fixed typos and added better suited (shorter genes) example · 00ffa524
  Jan Keller authored Feb 03, 2020
  
  00ffa524
- doc file for kegg.py with description, in- and output example · b6d3909d
  Jan Keller authored Feb 03, 2020
  
  b6d3909d
- Completed documentation of testing methods · b39da37e
  Jan Keller authored Feb 03, 2020
  
  b39da37e
- completed documentation · 7f8a4014
  Jan Keller authored Feb 03, 2020
  
  7f8a4014
- started to refine documentation · 59e488be
  Jan Keller authored Feb 03, 2020
  
  59e488be
- started to refine documentation · 7534beea
  Jan Keller authored Feb 03, 2020
  
  7534beea
- updated retriever for keg. Solved bugs and implemented better data structure · 7461bbe9
  jkeller authored Feb 03, 2020
  
  7461bbe9
- unittest for kegg.py · 45803dce
  jkeller authored Feb 03, 2020
  
  45803dce
31 Jan, 2020 4 commits
- begun to add discussed changes, pushed for weekend pull · 236d1000
  Jan Keller authored Jan 31, 2020
  
  236d1000
- documentation and debugging · 9b117c72
  Jan Keller authored Jan 31, 2020
  
  9b117c72
- implemented parsing option for dbxref_links to other databases · 67d7ec80
  Jan Keller authored Jan 31, 2020
  
  67d7ec80
- changed parsing algorithm to avoid redundant line-reading and reduce processing time · 00cfca88
  Jan Keller authored Jan 31, 2020
  
  00cfca88
30 Jan, 2020 4 commits
- removed unnecessary files · 262d75a6
  Jan Keller authored Jan 30, 2020
  
  262d75a6
- removed unnecessary files · 99f32607
  Jan Keller authored Jan 30, 2020
  
  99f32607
- corrected the arg.parse arguments · 88f5594b
  Jan Keller authored Jan 30, 2020
  
  88f5594b
- kegg retriever prototype · ed605b18
  Jan Keller authored Jan 30, 2020
  
  ed605b18
28 Jan, 2020 1 commit
- Parser in kegg.py implementiert. brite- und reference-Parser noch nicht funktionstüchtig · 71922351
  Jan Keller authored Jan 28, 2020
  
  71922351
27 Jan, 2020 1 commit
- First draft of the retriever for KEGG. Not giving any output yet. · 6529d3ed
  Jan Keller authored Jan 27, 2020
  
  6529d3ed
08 Jan, 2020 1 commit
- Make code more robust against invalid ids · bbfa8133
  Lukas Jelonek authored Jan 08, 2020
  
  bbfa8133
13 Nov, 2019 1 commit
- Merge branch 'develop' · 26edf18a
  Lukas Jelonek authored Nov 13, 2019
  
  26edf18a
11 Nov, 2019 5 commits
- Increase timeout in order to fix ci test problems with ncbi links · 7b72d8c6
  Lukas Jelonek authored Nov 11, 2019
  
  7b72d8c6
- Add git tox alpine image · 5b181dfe
  Lukas Jelonek authored Nov 11, 2019
  
  5b181dfe
- Manually install requirements for alpine image · 8a9399f1
  Lukas Jelonek authored Nov 11, 2019
  
  8a9399f1
- Set ci docker image to alpine in order to avoid ssl problems with uniprot.org · 68a87c4f
  Lukas Jelonek authored Nov 11, 2019
  
  68a87c4f
- Fix broken test · c14f4f3f
  Lukas Jelonek authored Nov 11, 2019
  
  c14f4f3f