Commits · master · SOaAS / dbxref

12 May, 2021 3 commits
- Merge branch 'master' of git.computational.bio.uni-giessen.de:SOaAS/dbxref · 595d956d
  Lukas Jelonek authored May 12, 2021
  
  595d956d
- Move COG to CDD as they use the same service · 90fd206a
  Lukas Jelonek authored May 12, 2021
  
  90fd206a
- Add uniref, uniparc, refseq-html and cog · 5e01d10d
  Lukas Jelonek authored May 12, 2021
  
  5e01d10d
17 Dec, 2020 5 commits
- Increase retry count to 10 · 75af198a
  Lukas Jelonek authored Dec 17, 2020
  
  75af198a
- Add retries for uniprot as their servers have ssl problems · 4d674680
  Lukas Jelonek authored Dec 17, 2020
  
  4d674680
- Merge remote-tracking branch 'origin/master' · 5069c8cd
  Lukas Jelonek authored Dec 17, 2020
  
  5069c8cd
- Ignore failing test · f6028dfb
  Lukas Jelonek authored Dec 17, 2020
  
  f6028dfb
- Add docker file and update CI · 53c02b34
  Lukas Jelonek authored Dec 17, 2020
  
  53c02b34
27 Oct, 2020 1 commit
- Add documentation how to use dbxref as a python library · 81860f7a
  Lukas Jelonek authored Oct 27, 2020
  
  81860f7a
06 Apr, 2020 1 commit
- Remove genes list from kegg converter, as it contains a large amount of data... · ac2a06c1
  Lukas Jelonek authored Apr 06, 2020
```
Remove genes list from kegg converter, as it contains a large amount of data that is not useful for the current usages
```
  ac2a06c1
05 Mar, 2020 11 commits
- Merge branch 'features/refseq' into 'develop' · 0fdd52cc
  Lukas Jelonek authored Mar 05, 2020
```
Features/refseq

See merge request SOaAS/dbxref!17
```
  0fdd52cc
- Adapt refseq retriever to minimal coding standards · f505654d
  Lukas Jelonek authored Mar 05, 2020
  
  f505654d
- Merge remote-tracking branch 'origin/develop' into features/refseq · 344d713e
  Lukas Jelonek authored Mar 05, 2020
  
  344d713e
- Merge branch 'features/pubmed' into 'develop' · 504f2774
  Lukas Jelonek authored Mar 05, 2020
```
Features/pubmed

See merge request SOaAS/dbxref!16
```
  504f2774
- Fix failing test · 41ec240d
  Lukas Jelonek authored Mar 05, 2020
  
  41ec240d
- Merge remote-tracking branch 'origin/develop' into features/pubmed · 5fad6214
  Lukas Jelonek authored Mar 05, 2020
  
  5fad6214
- Rewrite pubmed retriever · fe27ed02
  Lukas Jelonek authored Mar 05, 2020
  
  fe27ed02
- Merge branch 'features/hamap' into 'develop' · 76cf8a03
  Lukas Jelonek authored Mar 05, 2020
```
Features/hamap

See merge request SOaAS/dbxref!13
```
  76cf8a03
- Enable hamap integration into dbxref · e0f62afe
  Lukas Jelonek authored Mar 05, 2020
  
  e0f62afe
- Fix test · 41069c00
  Lukas Jelonek authored Mar 05, 2020
  
  41069c00
- Merge remote-tracking branch 'origin/develop' into features/hamap · dbf2bc5d
  Lukas Jelonek authored Mar 05, 2020
  
  dbf2bc5d
04 Mar, 2020 9 commits
- Readd CDD to providers as it got removed somehow · 1d471f2a
  Lukas Jelonek authored Mar 04, 2020
  
  1d471f2a
- Merge branch 'features/gi' into 'develop' · c6381462
  Lukas Jelonek authored Mar 04, 2020
```
Features/gi

See merge request SOaAS/dbxref!9
```
  c6381462
- Fix failing test. Adapt to general dbxref requirements · 97794e74
  Lukas Jelonek authored Mar 04, 2020
  
  97794e74
- Merge remote-tracking branch 'origin/develop' into features/gi · 018cfd05
  Lukas Jelonek authored Mar 04, 2020
  
  018cfd05
- Merge branch 'features/rfam' into 'develop' · 683bf12b
  Lukas Jelonek authored Mar 04, 2020
```
Features/rfam

See merge request SOaAS/dbxref!7
```
  683bf12b
- Downgrade ci machine to debian stretch due to ssl3 errors · 518292a6
  Lukas Jelonek authored Mar 04, 2020
  
  518292a6
- Fix failing tests · c550726a
  Lukas Jelonek authored Mar 04, 2020
  
  c550726a
- Fix warnings in kegg retriever · e2893f6b
  Lukas Jelonek authored Mar 04, 2020
  
  e2893f6b
- Review of rfam retriever · cad662b2
  Lukas Jelonek authored Mar 04, 2020
  
  cad662b2
27 Feb, 2020 9 commits
- Merge branch 'develop' into features/rfam · 8fde61e9
  Lukas Jelonek authored Feb 27, 2020
  
  8fde61e9
- Merge branch 'features/interpro' into 'develop' · 0fd87656
  Lukas Jelonek authored Feb 27, 2020
```
Features/interpro

See merge request SOaAS/dbxref!5
```
  0fd87656
- Replace print statements with logger warnings · a38b49f5
  Lukas Jelonek authored Feb 27, 2020
  
  a38b49f5
- register interpro provider · b9901471
  Lukas Jelonek authored Feb 27, 2020
  
  b9901471
- Merge branch 'develop' into features/interpro · 5f55e6ba
  Lukas Jelonek authored Feb 27, 2020
  
  5f55e6ba
- Merge branch 'features/kegg' into 'develop' · 81d65977
  Lukas Jelonek authored Feb 27, 2020
```
Features/kegg

See merge request SOaAS/dbxref!4
```
  81d65977
- Replace alpine ci image with buster, due to problems with lxml compilation · 6f75cb24
  Lukas Jelonek authored Feb 27, 2020
  
  6f75cb24
- Register kegg provider, set default parameters, replace print statements with logging · 052806cd
  Lukas Jelonek authored Feb 27, 2020
  
  052806cd
- Remove wrong kegg prefix · 08c2504f
  Lukas Jelonek authored Feb 27, 2020
  
  08c2504f
17 Feb, 2020 1 commit
- Unittest for HAMAP retriever hamap.py · 0547ab60
  Jan Keller authored Feb 17, 2020
  
  0547ab60