installation.rst 613 Bytes
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Installation
============

Requirements
------------

In order to run PSOT on your machine you need:

* git
* python >= 3
* nextflow
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* dbxref library
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* the bioinformatic tools you want to use

  * blastp
  * hmmscan
  * signalp
  * ghostx
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  * tmhmm
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  * targetp
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* the bioinformatic databases you want to use
  
  * PFAM
  * Swiss-Prot

Installation
------------

Install nextflow::
    
    curl -fsSL get.nextflow.io | bash 

Clone the git repository of PSOT::

    git clone git@git.computational.bio.uni-giessen.de:SOaAS/psot.git

Configuration
-------------

Adapt the paths in the config.yaml to your needs.