hmmer_vs_PFAM-A.yaml 767 Bytes
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# Module manifest for the blastp against swissprot analysis

# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name: 'hmmer_pfam_a'

# Short description of the analysis
info: 'hmmscan analysis against PFAM-A'

# The name of the script for the analysis step. Must take a --fasta parameter
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analysis:
    script: 'run_hmmer.py'
    parameters:
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        database: '/vol/biodb/pfam-31/Pfam-A.hmm'
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        evalue: 1e-10
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    execution:
        cluster:
            chunksize: 200
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    container: 'hmmer_pfam_a'
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# The name of the result to json converter script. Must take one parameter, the
# result file from the analysis_script
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converter:
    script: 'convert_hmmer.py'
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    parameters:
        dbxref: 'PFAM'