Commit 068a357a authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Add installation section to documentation

parent c48bce70
[0.2]
* Output format for homology tools has been aligned
* Changed module manifest format to allow parameters for converters
* Hidden files in modules directory are ignored
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......@@ -28,7 +28,7 @@ Workflow
5. Remove the execution directory
Structure of the Nextflow Script
----------------------------
--------------------------------
1. Run all analyses in parallel
2. Convert all analyses in parallel
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......@@ -11,6 +11,7 @@ Welcome to PSOT - protein sequence observation tool's documentation!
:caption: Contents:
concepts
installation
modules
......
Installation
============
Requirements
------------
In order to run PSOT on your machine you need:
* git
* python >= 3
* nextflow
* the bioinformatic tools you want to use
* blastp
* hmmscan
* signalp
* ghostx
* the bioinformatic databases you want to use
* PFAM
* Swiss-Prot
Installation
------------
Install nextflow::
curl -fsSL get.nextflow.io | bash
Clone the git repository of PSOT::
git clone git@git.computational.bio.uni-giessen.de:SOaAS/psot.git
Configuration
-------------
Adapt the paths in the config.yaml to your needs.
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