Adapt blastp result to hmmer output

bin/convert_blastp.py

@@ -35,18 +35,20 @@ with open(filename) as f:
                 documents[split[0]] = {"id": split[0], "computations": [{'tool':tool, 'results':[]}]}
             results = documents[split[0]]['computations'][0]['results']
 
-            result = {}
-            result["dbxref"] = "UniProtKB/Swiss-Prot:"+split[header['subject id']].split("|")[1]
+            result = {'target':{}, 'query':{}}
+            result['target']["dbxref"] = "UniProtKB/Swiss-Prot:"+split[header['subject id']].split("|")[1]
             if '% identity' in header:
-                result["percent_identity"] = float(split[header['% identity']])
+                result['target']["percent_identity"] = float(split[header['% identity']])
             if 'q. start' in header and 'q. end' in header:
-                result['qloc'] = split[header['q. start']] + '-' + split[header['q. end']]
+                result['query']['start'] = split[header['q. start']]
+                result['query']['end'] = split[header['q. end']]
             if 's. start' in header and 's. end' in header:
-                result['sloc'] = split[header['s. start']] + '-' + split[header['s. end']]
+                result['target']['start'] = split[header['s. start']]
+                result['target']['end'] = split[header['s. end']]
             if 'evalue' in header:
-                result['evalue'] = float(split[header['evalue']])
+                result['target']['evalue'] = float(split[header['evalue']])
             if 'BTOP' in header:
-                result['btop'] = split[header['BTOP']]
+                result['target']['btop'] = split[header['BTOP']]
 
             results.append(result)