diff --git a/modules/blast_vs_swissprot.yaml b/modules/blast_vs_swissprot.yaml
index 9010a237e1650ec655f28ba9b1eccedb06cc55b1..ded3304d820e95b72376d62d29ef85bedfb2b24d 100644
--- a/modules/blast_vs_swissprot.yaml
+++ b/modules/blast_vs_swissprot.yaml
@@ -8,8 +8,8 @@ name: 'blastp_swissprot'
 info: 'blastp analysis against swissprot'
 
 # The name of the script for the analysis step. Must take a --fasta parameter
-analysis_script: '../bin/module_blast_swissprot.py'
+analysis_script: 'module_blast_swissprot.py'
 
 # The name of the result to json converter script. Must take one parameter, the
 # result file from the analysis_script
-converter_script: '../bin/convert_blast_swissprot.py'
+converter_script: 'convert_blast_swissprot.py'
diff --git a/modules/signalp.yaml b/modules/signalp.yaml
index fbfa51a1508352febd3788eb8545de3db4e05e3e..fee21f7851e075b761027095fc8191653697d711 100644
--- a/modules/signalp.yaml
+++ b/modules/signalp.yaml
@@ -8,8 +8,8 @@ name: 'signalp'
 info: 'predict signal peptides'
 
 # The name of the script for the analysis step. Must take a --fasta parameter
-analysis_script: '../bin/module_signalp.py'
+analysis_script: 'module_signalp.py'
 
 # The name of the result to json converter script. Must take one parameter, the
 # result file from the analysis_script
-converter_script: '../bin/convert_signalp.py'
+converter_script: 'convert_signalp.py'