Translate location identifiers into more verbose representations.

scripts/convert_targetp.py

@@ -8,6 +8,8 @@ parser.add_argument('--result', '-r', required = True, help = 'The targetp resul
 parser.add_argument('--output', '-o', required = True, help = 'The converted results json file')
 args = parser.parse_args()
 
+loc_dict = {"C": "chloroplast", "M": "mitochondrion", "S": "secretory pathway", "_": "other", "*": "undetermined"}
+
 filename = args.result
 documents = {}
 with open(filename) as f:
@@ -27,6 +29,8 @@ with open(filename) as f:
                     if field_index[field] is not None:
                         if field in ["cTP", "mTP", "SP"]:
                             results[field.lower()] = float(split[field_index[field]])
+                        elif field == "Loc":
+                            results[field.lower()] = loc_dict[split[field_index[field]]]
                         else:
                             results[field.lower()] = split[field_index[field]]
         else: