Fix bug: relative execution_directory does not work

a574711d · Lukas Jelonek · 436ba8fb · a574711d
Commit a574711d authored Jun 21, 2017 by Lukas Jelonek
--- a/bin/psot
+++ b/bin/psot
@@ -53,7 +53,7 @@ def generate_execution(config, args):
    execution['fasta'] = os.path.abspath(args.fasta)
    execution['output'] = os.path.abspath(args.output)
    if args.execution_dir:
-        execution['directory'] = args.execution_dir
+        execution['directory'] = os.path.abspath(args.execution_dir)
    else:
        execution['directory'] = tempfile.mkdtemp()
    execution['modules'] = generate_execution_modules_for_profile(config, args.profile)