Commit cda62f3e authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Redesign databases. Introduce relative database paths. Docker steps mount the...

Redesign databases. Introduce relative database paths. Docker steps mount the associated databases directly.
parent 540e991b
......@@ -11,7 +11,7 @@ info: 'blastp analysis against swissprot'
analysis:
script: 'run_blastp.py'
parameters:
database: '/uniprot/uniprot_sprot.fasta'
database: 'uniprot/uniprot_sprot.fasta'
evalue: 1e-10
use_accession:
container:
......
......@@ -11,7 +11,7 @@ info: 'ghostx analysis against swissprot'
analysis:
script: 'run_ghostx.py'
parameters:
database: '/ghostx/uniprot_sprot'
database: 'ghostx/uniprot_sprot'
container:
docker: 'www.computational.bio.uni-giessen.de:5003/psot/ghostx'
......
......@@ -11,7 +11,7 @@ info: 'hmmscan analysis against PFAM-A'
analysis:
script: 'run_hmmer.py'
parameters:
database: '/pfam/Pfam-A.hmm'
database: 'pfam/Pfam-A.hmm'
evalue: 1e-10
execution:
cluster:
......
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