Commit d47939ae authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Removed unneeded nextflow script

parent ab785538
params.file = "example/proteins.fas"
Channel.fromPath(params.file).into{for_blast; for_signalp}
process blast_swissprot {
input:
file fasta from for_blast
output:
file "${fasta}.blast_swissprot.tsv" into blast_results
script:
"""
module_blast_swissprot.py --fasta $fasta > ${fasta}.blast_swissprot.tsv
"""
}
process convert_blast_swissprot {
input:
file result from blast_results
output:
file "${result}.json" into converted_blast_results
script:
"""
convert_blast_swissprot.py ${result} > ${result}.json
"""
}
process signalp {
input:
file fasta from for_signalp
output:
file "${fasta}.signalp.tsv" into signalp_results
script:
"""
module_signalp.py --fasta $fasta > ${fasta}.signalp.tsv
"""
}
process convert_signalp {
input:
file result from signalp_results
output:
file "${result}.json" into converted_signalp_results
script:
"""
convert_signalp.py ${result} > ${result}.json
"""
}
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment