Commit d6e5b700 authored by Marc's avatar Marc
Browse files

cleanup

parent e332e233
databases:
localpath: '/home/ubuntu/db'
databases:
# localpath is the database directory in which the databases are downloaded to,
# containerpath is the mountpoint for container runs (changing containerpath requires changing the path in nextflow.py as well)
localpath: '/var/tmp/psot-databases'
containerpath: '/databases'
tools:
# Replace tool paths if they are located elsewhere
......
......@@ -16,7 +16,7 @@ analysis:
# run script in a container
container:
docker: 'cbs-tools'
singularity: '/home/ubuntu/project/work/singularity/cbs-tools/cbs-tools.sif'
singularity:
# The configuration of the script for the json conversion step.
converter:
......
......@@ -16,7 +16,7 @@ analysis:
# run script in a container
container:
docker: 'cbs-tools'
singularity: '/home/ubuntu/project/work/singularity/cbs-tools/cbs-tools.sif'
singularity:
# The configuration of the script for the json conversion step.
converter:
......
......@@ -16,7 +16,7 @@ analysis:
# run script in a container
container:
docker: 'cbs-tools'
singularity: '/home/ubuntu/project/work/singularity/cbs-tools/cbs-tools.sif'
singularity:
# The configuration of the script for the json conversion step.
converter:
......
name: 'custom'
info: 'Profile that contains tools for testing and development'
modules:
signalp:
organism: 'euk'
targetp:
organism_group: 'non-plant'
hmmer_pfam_a:
\ No newline at end of file
name: 'custom2'
info: 'Profile that contains tools for more testing'
modules:
targetp:
organism_group: 'non-plant'
signalp:
organism: 'euk'
tmhmm:
name: 'custom3'
info: 'Profile that contains tools for even more testing'
modules:
targetp:
organism_group: 'non-plant'
signalp:
organism: 'euk'
tmhmm:
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment