Commits · 0ef7a5049d02899e3c67f1bb0bb2bba05b4edf83 · SOaAS / psot.repository · GitLab

07 Mar, 2018 3 commits
- Fix bug: convert_targetp still has problems when installed in a virtualenv · 0ef7a504
  Lukas Jelonek authored Mar 07, 2018
  
  0ef7a504
- Fix bug: Cluster execution does not work within a virtual environment · 8c34e904
  Lukas Jelonek authored Mar 07, 2018
  
  8c34e904
- Update documentation · 708eebeb
  Lukas Jelonek authored Mar 07, 2018
  
  708eebeb
07 Feb, 2018 5 commits
- Implement support for accessing modules from other repositories in profiles · 8b448cb6
  Lukas Jelonek authored Feb 07, 2018
  
  8b448cb6
- Fix bug: adapt targetp runner to new helpers path · 0a11c872
  Lukas Jelonek authored Feb 07, 2018
  
  0a11c872
- Fix bug: adapt ghostx runner to new helpers path · 4f316a5c
  Lukas Jelonek authored Feb 07, 2018
  
  4f316a5c
- Modify tests psot-repository that it can actually be executed with psot · fce52ed3
  Lukas Jelonek authored Feb 07, 2018
  
  fce52ed3
- Moved helper scripts to own directory. Use absolute paths for scripts. · 78d90258
  Lukas Jelonek authored Feb 07, 2018
  
  78d90258
31 Jan, 2018 13 commits
- Add user interface integration for psot repositories via cli and environment variable · 67704550
  Lukas Jelonek authored Jan 31, 2018
  
  67704550
- Merge branch 'tool-name-in-live-results' into 'develop' · 660a0d11
  Lukas Jelonek authored Jan 31, 2018
```
Replace uuid in live results with tool name (resolves #20).

Closes #20

See merge request SOaAS/psot!9
```
  660a0d11
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop · 312d16fc
  Lukas Jelonek authored Jan 31, 2018
  
  312d16fc
- Fix bug: retrieve information uses always the same name (fixes #45) · a7249505
  Lukas Jelonek authored Jan 31, 2018
  
  a7249505
- Merge branch 'secure-tmpdir-removal' into 'develop' · 6c90be0e
  Lukas Jelonek authored Jan 31, 2018
```
Use pythons context manager to ensure temp dir removal in tests (resolves #44).

Closes #44

See merge request SOaAS/psot!10
```
  6c90be0e
- Use pythons context manager to ensure temp dir removal in tests (resolves #44). · 8b138dd0
  hmueller authored Jan 31, 2018
  
  8b138dd0
- Cleanup · 09d53eb3
  Lukas Jelonek authored Jan 31, 2018
  
  09d53eb3
- Flatten documentation structure to a single directory · 196c6240
  Lukas Jelonek authored Jan 31, 2018
  
  196c6240
- Update README.rst · a32f0cea
  Lukas Jelonek authored Jan 31, 2018
  
  a32f0cea
- Merge remote-tracking branch 'origin/develop' into tool-name-in-live-results · 048e6207
  hmueller authored Jan 31, 2018
  
  048e6207
- Update readme · 37d1acf3
  Lukas Jelonek authored Jan 31, 2018
  
  37d1acf3
- Implement merge of multiple psot repositories · 278b28bc
  Lukas Jelonek authored Jan 31, 2018
  
  278b28bc
- Replace uuid in live results with tool name (resolves #20). · 044a1df9
  hmueller authored Jan 31, 2018
  
  044a1df9
30 Jan, 2018 2 commits
- Add test methods for checking whether scripts for repository are resolved correctly. · c62b52a7
  Lukas Jelonek authored Jan 30, 2018
  
  c62b52a7
- Refactor config into repository and application config. · 6cfc2cf4
  Lukas Jelonek authored Jan 30, 2018
  
  6cfc2cf4
29 Jan, 2018 1 commit
- Fix bug: replace default fasta file with concrete fasta file · c5e97033
  Lukas Jelonek authored Jan 29, 2018
  
  c5e97033
24 Jan, 2018 7 commits
- Add feature: dbxref lookup (closes #23) · dad7e862
  Lukas Jelonek authored Jan 24, 2018
```
Sem-Ver: feature
```
  dad7e862
- Replace single document handling with dictionary documents handling for dbxref resolver · a0fdafcd
  Lukas Jelonek authored Jan 24, 2018
  
  a0fdafcd
- Add script to resolve dbxrefs for psot results · 3b7d874f
  Lukas Jelonek authored Jan 24, 2018
  
  3b7d874f
- Add unit tests (fixes #38) · 19c938e1
  Lukas Jelonek authored Jan 24, 2018
  
  19c938e1
- Fix bug: Analysis is executed even if no valid file is given (fixes #39) · 7ecd0ccd
  Lukas Jelonek authored Jan 24, 2018
```
Sem-Ver: bugfix
```
  7ecd0ccd
- Fix bug: TMHMM json output result key should hold a list (solves #32) · 60e4da60
  Lukas Jelonek authored Jan 24, 2018
```
Sem-Ver: bugfix
```
  60e4da60
- Add setup script. Move all resources to psot module · d32426b0
  Lukas Jelonek authored Jan 23, 2018
  
  d32426b0
16 Jan, 2018 1 commit
- Remove accidentally uploaded screenshot · 346fe67e
  Lukas Jelonek authored Jan 16, 2018
  
  346fe67e
19 Dec, 2017 1 commit
- Merge branch 'signalp-mature-option' into 'develop' · fe352f70
  Lukas Jelonek authored Dec 19, 2017
```
SignalP include_mature parameter

See merge request SOaAS/psot!8
```
  fe352f70
13 Dec, 2017 3 commits
- Prevent writing of empty string to json if mature lookup fails. · e626a12c
  hmueller authored Dec 13, 2017
  
  e626a12c
- Include mature sequence in json output if available. · 4dda3c47
  hmueller authored Dec 13, 2017
  
  4dda3c47
- Make signalp run script accept optional include_mature flag. · f72da30b
  hmueller authored Dec 13, 2017
  
  f72da30b
12 Dec, 2017 4 commits
- Merge branch 'fix-include-sequence' into 'develop' · 5e73cabf
  Lukas Jelonek authored Dec 12, 2017
```
Fix loss of last fasta entry. Solves #31

See merge request SOaAS/psot!7
```
  5e73cabf
- Merge branch 'tmhmm' into 'develop' · 639c784e
  Lukas Jelonek authored Dec 12, 2017
```
Tmhmm

See merge request SOaAS/psot!5
```
  639c784e
- merge develop into tmhmm · c1d124d9
  lmueller authored Dec 12, 2017
  
  c1d124d9
- added resolve_dbxrefs.py to nextflow.py (not working yet) · 458a3c11
  lmueller authored Dec 12, 2017
  
  458a3c11