Commits · d222fc30c8dbc192437ca80b7c9e774c2f2e9e3d · SOaAS / psot.repository · GitLab

10 Feb, 2019 1 commit
- bug fixed: nextflow.config now also correct if processes are not started in virtual environment · d222fc30
  Marc authored Feb 10, 2019
  
  d222fc30
09 Feb, 2019 2 commits
- include 'executor', 'clusterOptions' and 'beforeScript' properties in nextflow.config generation · 08bdbb12
  Marc authored Feb 09, 2019
  
  08bdbb12
- run scripts can now "look up" if they were started inside of the container · e7854eff
  Marc authored Feb 09, 2019
  
  e7854eff
08 Feb, 2019 1 commit
- netxflow.py generates a nextflow.config file now; add container element in... · 4d48a8a1
  Marc authored Feb 08, 2019
```
netxflow.py generates a nextflow.config file now; add container element in some modules in the default_repo
```
  4d48a8a1
07 Mar, 2018 2 commits
- Fix bug: convert_targetp still has problems when installed in a virtualenv · 0ef7a504
  Lukas Jelonek authored Mar 07, 2018
  
  0ef7a504
- Fix bug: Cluster execution does not work within a virtual environment · 8c34e904
  Lukas Jelonek authored Mar 07, 2018
  
  8c34e904
07 Feb, 2018 1 commit
- Moved helper scripts to own directory. Use absolute paths for scripts. · 78d90258
  Lukas Jelonek authored Feb 07, 2018
  
  78d90258
31 Jan, 2018 2 commits
- Fix bug: retrieve information uses always the same name (fixes #45) · a7249505
  Lukas Jelonek authored Jan 31, 2018
  
  a7249505
- Replace uuid in live results with tool name (resolves #20). · 044a1df9
  hmueller authored Jan 31, 2018
  
  044a1df9
30 Jan, 2018 1 commit
- Refactor config into repository and application config. · 6cfc2cf4
  Lukas Jelonek authored Jan 30, 2018
  
  6cfc2cf4
29 Jan, 2018 1 commit
- Fix bug: replace default fasta file with concrete fasta file · c5e97033
  Lukas Jelonek authored Jan 29, 2018
  
  c5e97033
24 Jan, 2018 1 commit
- Add feature: dbxref lookup (closes #23) · dad7e862
  Lukas Jelonek authored Jan 24, 2018
```
Sem-Ver: feature
```
  dad7e862
12 Dec, 2017 1 commit
- added resolve_dbxrefs.py to nextflow.py (not working yet) · 458a3c11
  lmueller authored Dec 12, 2017
  
  458a3c11
21 Nov, 2017 1 commit
- Replace drmaa with SGE · 301d74c2
  Lukas Jelonek authored Nov 21, 2017
  
  301d74c2
10 Aug, 2017 3 commits
- Set java drmaa lib before running nextflow · ecf65900
  Lukas Jelonek authored Aug 10, 2017
  
  ecf65900
- Add --use_cluster flag to CLI and pass it to the nextflow executor · 13a05b98
  Lukas Jelonek authored Aug 10, 2017
  
  13a05b98
- Add chunkprocessing via drmaa · 6dbf885c
  Lukas Jelonek authored Aug 10, 2017
  
  6dbf885c
01 Aug, 2017 1 commit
- Restructure project to not mix packages, scripts and executables (Fixes #21 ) · d8983f62
  Lukas Jelonek authored Aug 01, 2017
  
  d8983f62
26 Jul, 2017 1 commit
- Modified module manifest structure to allow parameters for converter scripts · 95dd1a8d
  Lukas Jelonek authored Jul 26, 2017
  
  95dd1a8d
22 Mar, 2017 1 commit
- Implemented live results in a subfolder of the output directory · 290bf108
  Lukas Jelonek authored Mar 22, 2017
  
  290bf108
08 Mar, 2017 1 commit
- Added default execution in tmp directory · 72590042
  Lukas Jelonek authored Mar 08, 2017
  
  72590042
28 Feb, 2017 1 commit
- Refactored nextflow code generation and execution into module. Implemented postprocessing · ab785538
  Lukas Jelonek authored Feb 28, 2017
  
  ab785538