Protein Sequence Observation Tool
A tool that executes several bioinformatic tools for a set of protein sequences. The results of all tools are converted into json documents, enabling for simple post processing.
Getting started (Setup)
Prerequisites:
- git
- python3
- nextflow
Supported bioinformatic tools:
- hmmer
- blastp
- signalp
- ghostx
- targetp
Install nextflow:
curl -fsSL get.nextflow.io | bash
Checkout the repository:
git clone git@git.computational.bio.uni-giessen.de:SOaAS/psot.git
Configuration
In the installation directory is a config.yaml file, that is used to override the paths to the bioinformatic tools and that is used to specify the available profiles.
TODO write more about the structure of a profile
How to create a new module?
TODO write what is a module TODO write about module configuration