Commit e9e0f4db authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Add configuration exercise

parent 0baf9d29
......@@ -86,6 +86,13 @@ Add command line parameters to your pipeline, at least the input files and the
target directories. Write some code for sanity checks of the passed parameters,
e.g. are the files available, is the result directory already there, ...
### (Optional) Generate runtime report
Create a `nextflow.config` file next to the `main.nf` script and configure the
reporting feature to always generate a report.html file. See
https://www.nextflow.io/docs/latest/config.html#scope-report
### Add multiqc process
MultiQC is a tool that aggregates statistics from several bioinformatics tools
......@@ -108,3 +115,4 @@ https://www.nextflow.io/docs/latest/operator.html#transforming-operators for
the right channel operator and apply it to the channel in the input block of
your multiqc process. Be sure to use the right qualifier for files.
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