config.yml 576 Bytes
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---
benchmark_repeats: 3
workdir: "results"
original_perl_script: "perl ../original_wf/backmap/backmap.pl"
nextflow_script: "nextflow ../nextflow/backmap.nf -c nextflow/nextflow.config --threads 16"
assembly: "../dataset1/dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta"
datadir: "../dataset1/"
unpaired: dgal.confilter.fq
paired_1: dgal_1.paired.confilter.fq
paired_2: dgal_2.paired.confilter.fq
pacbio:   pacbio_gal.target-and-other.blobfilter.fastq
perl_packages:
  - Cwd
  - IPC::Cmd
  - Number::FormatEng
  - Parallel::Loops