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tbg
backmap_workflow
Commits
0445d4d2
Commit
0445d4d2
authored
Feb 15, 2021
by
Raphael Müller
Browse files
fix for nanosim after system update
parent
38fd1a6e
Changes
3
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test/config.yml
View file @
0445d4d2
...
...
@@ -3,8 +3,8 @@ benchmark_repeats: 3
workdir
:
"
results"
original_perl_script
:
"
perl
../original_wf/backmap/backmap.pl"
nextflow_script
:
"
nextflow
../nextflow/backmap.nf
-c
nextflow.config
--threads
16"
assembly
:
"
../dataset/dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3
.fasta"
datadir
:
"
../
dataset/"
assembly
:
"
/vol/cb/projects/112020_tbg_backmap/dataset/dgal.big
.fasta"
datadir
:
"
dataset/"
unpaired
:
dgal.confilter.fq
paired_1
:
dgal_1.paired.confilter.fq
paired_2
:
dgal_2.paired.confilter.fq
...
...
test/dataset
0 → 120000
View file @
0445d4d2
../dataset/
\ No newline at end of file
test/envs/nanosim.yml
View file @
0445d4d2
...
...
@@ -3,4 +3,6 @@ channels:
-
bioconda
-
defaults
dependencies
:
-
python=3.7
-
nanosim
-
scikit-learn=0.20
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