Commit 0445d4d2 authored by Raphael Müller's avatar Raphael Müller
Browse files

fix for nanosim after system update

parent 38fd1a6e
......@@ -3,8 +3,8 @@ benchmark_repeats: 3
workdir: "results"
original_perl_script: "perl ../original_wf/backmap/backmap.pl"
nextflow_script: "nextflow ../nextflow/backmap.nf -c nextflow.config --threads 16"
assembly: "../dataset/dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta"
datadir: "../dataset/"
assembly: "/vol/cb/projects/112020_tbg_backmap/dataset/dgal.big.fasta"
datadir: "dataset/"
unpaired: dgal.confilter.fq
paired_1: dgal_1.paired.confilter.fq
paired_2: dgal_2.paired.confilter.fq
......
../dataset/
\ No newline at end of file
......@@ -3,4 +3,6 @@ channels:
- bioconda
- defaults
dependencies:
- python=3.7
- nanosim
- scikit-learn=0.20
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