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Commit 1c51bdad authored by Raphael Müller's avatar Raphael Müller
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removed run.sh

parent 0740ace6
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run.sh deleted 100755 → 0
View file @ 0740ace6
#!/bin/bash
set -e
if [[ whoami -eq 'rmueller' ]]
then
source /homes/rmueller/bin/conda_init
fi
export NXF_WORK="/var/scratch/rmueller/work"
export NXF_ANSI_LOG=false
unset DISPLAY
conda activate backmap-test
snakemake --profile sm_profile/ --cores 64 -F $1 && snakemake --report "report.$(date +%F-%H-%M-%S).html"
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