Commit 3bbb0288 authored by Raphael Müller's avatar Raphael Müller
Browse files

added directory structure

parent 5ffca00f
......@@ -265,7 +265,57 @@ R Core Team (2019). R: A Language and Environment for Statistical Computing. <ht
`/vol/cb/projects/112020_tbg_backmap`
## Directory structure
## Directory structure (as of date 01/06/2021)
```
.
├── dataset
│   ├── dgal_1.paired.confilter.fq
│   ├── dgal_1.paired.confilter.fq.gz
│   ├── dgal_2.paired.confilter.fq
│   ├── dgal_2.paired.confilter.fq.gz
│   ├── dgal.confilter.fq
│   ├── dgal.confilter.fq.gz
│   ├── dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta
│   ├── dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta.gz
│   ├── dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta.pb.sort.bam
│   ├── dgal_ra_pb-target-and-other_ill-confilter.blobfilter.rmmt_sspace-lr3_lrgc3_pg3_pilon_3.fasta.sort.bam
│   ├── nohup.out
│   ├── pacbio_gal.target-and-other.blobfilter.fastq
│   ├── pacbio_gal.target-and-other.blobfilter.fastq.gz
│   └── Test_datasets.zip
├── environment-dev.yml
├── environment-test.yml
├── environment.yml
├── img
│   ├── RallNew.png
│   └── RallOld.png
├── nextflow
│   ├── backmap.nf
│   └── nextflow.config
├── original_wf
│   └── backmap
├── playzone
│   ├── coverage_check
│   └── nextflow_tests
├── README.md
└── test
├── benchmarks
├── config.yml
├── data_prep
├── data_prep_bams
├── envs
├── logs
├── no_backup
├── params_files
├── results
├── run-tests.sh
├── sm_profile
├── Snakefile
└── snakemake_workflows
19 directories, 25 files
```
## Test files
......
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