Commit 3f815dc4 authored by Raphael Müller's avatar Raphael Müller
Browse files

escaped `code` sequences in README

parent f31db586
......@@ -83,14 +83,14 @@ Optional Options: [default]
### Parameters
- {+ all options now have a long version, short version is currently not available +}
- {+ added option `--illumina-bam-files`, `--pacbio-bam-files`, `--nanopore-bam-files`, which substitute `-b` +}
- {+ `--debug` prints internal variables for faster development and bug investigations +}
- {+ `--threads` sets the maximum number of threads per process (not maximum number of threads of the whole workflow) +}
- {- removed `-b`:splitted into three different options -}
- {- removed `-sort`: every bam is now sorted -}
- {- removed `-v`: removed, because this is a nextflow feature -}
- {- removed `-dry-run` -}
- {- removed `-t`: handled by nextflow -}
- {+ added option \`--illumina-bam-files\`, \`--pacbio-bam-files\`, \`--nanopore-bam-files\`, which substitute \`-b\` +}
- {+ \`--debug\` prints internal variables for faster development and bug investigations +}
- {+ \`--threads\` sets the maximum number of threads per process (not maximum number of threads of the whole workflow) +}
- {- removed \`-b\`:splitted into three different options -}
- {- removed \`-sort\`: every bam is now sorted -}
- {- removed \`-v\`: removed, because this is a nextflow feature -}
- {- removed \`-dry-run\` -}
- {- removed \`-t\`: handled by nextflow -}
### Multiple files of one kind
......
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