Commit 9c498525 authored by Raphael Müller's avatar Raphael Müller
Browse files

Update README.md

parent 1cb417ee
......@@ -70,7 +70,7 @@ Optional Options: [default]
--file-separator STR Overrides file separator [,]
--output STR Output directory [./Results/]
Will be created if not existing
--prefix STR Prefix of output files
--prefix STR Prefix of output files [tbg_backmap]
--keep-temporary Keep temporary, intermediate files [false]
--threads INT Maximum number of threads per process [1]
This is not the total number of available threads!
......@@ -173,7 +173,7 @@ $ nextflow run backmap.nf --assembly assembly.fasta --pacbio pacbio1.fq,pacbio2.
Genome size estimation with bam files can now be done if assembly is given
```
$ nextflow run backmap.nf --assembly assembly.fasta --pacbio-bam-files-- pacbio1.bam,pacbio2.bam,pacbio3.bam
$ nextflow run backmap.nf --assembly assembly.fasta --pacbio-bam-files pacbio1.bam,pacbio2.bam,pacbio3.bam
```
### Improved R scripts
......
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