fixed linter issues

.groovylintrc.json

+{
+    "extends": "recommended",
+    "rules": {
+        "Instanceof": "off",
+        "DuplicateMapLiteral": "off",
+        "CompileStatic": "off",
+        "DuplicateNumberLiteral": {
+          "ignoreNumbers": "0,1,2,3,4,5"
+        },
+        "DuplicateStringLiteral": {
+          "ignoreStrings": "*.err;*.pdf;*.{log,err}",
+          "ignoreStringsDelimiter" : ";",
+          "duplicateStringMinimumLength": 1
+        },
+        "VariableName": {
+          "finalRegex": "[A-Z_0-9]*"
+        }
+    }
+}
+

environment-dev.yml

@@ -18,4 +18,4 @@ dependencies:
   - r-base
   - r-ggplot2
   - r-dplyr
-  - nf-core
+  - nodejs