Update README.md

README.md

@@ -127,36 +127,24 @@ graph TD;
     SSN --> NSor[Nanopore Sorted Bam Files];
   end
 
-  subgraph Qualimap
-    ISor --> QMI{qualimap} --> MultiQC{{multiqc}}
-    PSor --> QMP{qualimap} --> MultiQC
-    NSor --> QMN{qualimap} --> MultiQC
-  end
-
-  subgraph RScripts
-    ISor --> bedI{bedtools genomecov} --> RCovSingleI{{"R Coverage Plot (single)"}}
-    PSor --> bedP{bedtools genomecov} --> RCovSingleP{{"R Coverage Plot (single)"}}
-    NSor --> bedN{bedtools genomecov} --> RCovSingleN{{"R Coverage Plot (single)"}}
+  ISor --> QMI{qualimap} --> MultiQC{{multiqc}}
+  PSor --> QMI
+  NSor --> QMI
+  
 
-    bedI --> RCovMulti{{"R Coverage Plot (multi)"}}
-    bedP --> RCovMulti
-    bedN --> RCovMulti
-  end
+  ISor --> bedI{bedtools genomecov} --> RCovSingleI{{"R Coverage Plot (single)"}}
+  PSor --> bedI
+  NSor --> bedI
 
-  subgraph Samtools Stat
-    ISor --> SSTI{{samtools stat}}
-    PSor --> SSTP{{samtools stat}}
-    NSor --> SSTN{{samtools stat}}
-  end
+  bedI --> RCovMulti{{"R Coverage Plot (multi)"}}
+  
+  ISor --> SSTI{{samtools stat}}
+  PSor --> SSTI
+  NSor --> SSTI
+  
+  bedI --> GSEI{{Genome Size Estimation}}
+  Assembly --> GSEI
 
-  subgraph Genome Size Estimation
-    bedI --> GSEI{{Genome Size Estimation}}
-    bedP --> GSEP{{Genome Size Estimation}}
-    bedN --> GSEN{{Genome Size Estimation}}
-    Assembly --> GSEI
-    Assembly --> GSEP
-    Assembly --> GSEN
-  end
 ```
 
 ## Changes to the original perl pipeline