Commit ce64e1d5 authored by Raphael Müller's avatar Raphael Müller
Browse files

Update README.md

parent 70ac244f
...@@ -127,36 +127,24 @@ graph TD; ...@@ -127,36 +127,24 @@ graph TD;
SSN --> NSor[Nanopore Sorted Bam Files]; SSN --> NSor[Nanopore Sorted Bam Files];
end end
subgraph Qualimap ISor --> QMI{qualimap} --> MultiQC{{multiqc}}
ISor --> QMI{qualimap} --> MultiQC{{multiqc}} PSor --> QMI
PSor --> QMP{qualimap} --> MultiQC NSor --> QMI
NSor --> QMN{qualimap} --> MultiQC
end
subgraph RScripts
ISor --> bedI{bedtools genomecov} --> RCovSingleI{{"R Coverage Plot (single)"}}
PSor --> bedP{bedtools genomecov} --> RCovSingleP{{"R Coverage Plot (single)"}}
NSor --> bedN{bedtools genomecov} --> RCovSingleN{{"R Coverage Plot (single)"}}
bedI --> RCovMulti{{"R Coverage Plot (multi)"}} ISor --> bedI{bedtools genomecov} --> RCovSingleI{{"R Coverage Plot (single)"}}
bedP --> RCovMulti PSor --> bedI
bedN --> RCovMulti NSor --> bedI
end
subgraph Samtools Stat bedI --> RCovMulti{{"R Coverage Plot (multi)"}}
ISor --> SSTI{{samtools stat}}
PSor --> SSTP{{samtools stat}} ISor --> SSTI{{samtools stat}}
NSor --> SSTN{{samtools stat}} PSor --> SSTI
end NSor --> SSTI
bedI --> GSEI{{Genome Size Estimation}}
Assembly --> GSEI
subgraph Genome Size Estimation
bedI --> GSEI{{Genome Size Estimation}}
bedP --> GSEP{{Genome Size Estimation}}
bedN --> GSEN{{Genome Size Estimation}}
Assembly --> GSEI
Assembly --> GSEP
Assembly --> GSEN
end
``` ```
## Changes to the original perl pipeline ## Changes to the original perl pipeline
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment