Commit f9ee0bf2 authored by Raphael Müller's avatar Raphael Müller
Browse files

feed in pacbio ccs merged file

parent 3729234b
......@@ -417,7 +417,7 @@ process sortAllBamFiles {
publishDir COPYMODE
cpus { PROCESSMAXTHREADS > threads ? threads : PROCESSMAXTHREADS }
input:
tuple val(tech), file(bam) from chSortIlluminaBamFile.mix(chSortPacbioBamFile).mix(chSortNanoporeBamFile)
tuple val(tech), file(bam) from chSortIlluminaBamFile.mix(chSortPacbioBamFile).mix(chSortPacbioCCSBamFile).mix(chSortNanoporeBamFile)
output:
tuple val("$tech"), file("${bam.baseName}.sort.bam") into chQualimapSortedBams,
chComputeCoverageSortedBams,
......
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