Commits · master · tbg / backmap_workflow

12 Mar, 2021 1 commit
- Merge branch 'feature_css_reads' into 'master' · d5daad7f
  Raphael Müller authored Mar 12, 2021
```
Feature: PacBio CCS Reads

See merge request !3
```
  d5daad7f
01 Mar, 2021 7 commits
- updated readme · dc5bbee2
  Raphael Müller authored Mar 01, 2021
  
  dc5bbee2
- typo in ccs file · 5ff69f92
  Raphael Müller authored Mar 01, 2021
  
  5ff69f92
- feed in pacbio ccs merged file · f9ee0bf2
  Raphael Müller authored Mar 01, 2021
  
  f9ee0bf2
- added process for merging pacbio ccs bam files · 3729234b
  Raphael Müller authored Mar 01, 2021
  
  3729234b
- added Channel for pbccs input files and added mapping process · 437a9b5b
  Raphael Müller authored Mar 01, 2021
  
  437a9b5b
- added params for pacbio ccs · 018300fb
  Raphael Müller authored Mar 01, 2021
  
  018300fb
- added simulation rules for pb clr and ccs reads · 7521de08
  Raphael Müller authored Mar 01, 2021
  
  7521de08
17 Feb, 2021 4 commits
- Merge branch 'long' into 'master' · 2874ec5a
  Oliver Schwengers authored Feb 17, 2021
```
Added Support for longer genomes

See merge request !2
```
  2874ec5a
- Added rule for big assembly. Changed path from absolute to relative · 0ee93f84
  Raphael Müller authored Feb 17, 2021
  
  0ee93f84
- changed process for writing results to file to collectFile Operator · 99065d98
  Raphael Müller authored Feb 17, 2021
  
  99065d98
- added process for writing results to file · 26e7d963
  Raphael Müller authored Feb 17, 2021
  
  26e7d963
15 Feb, 2021 2 commits
- fix for nanosim after system update · 0445d4d2
  Raphael Müller authored Feb 15, 2021
  
  0445d4d2
- changed parsing from string to int to string to long · 38fd1a6e
  Raphael Müller authored Feb 15, 2021
  
  38fd1a6e
07 Jan, 2021 8 commits
- updated help · 32cd8a0c
  Raphael Müller authored Jan 07, 2021
  
  32cd8a0c
- Update README.md · 9c498525
  Raphael Müller authored Jan 07, 2021
  
  9c498525
- Merge branch 'master' of https://git.computational.bio.uni-giessen.de/tbg/backmap_workflow · 1cb417ee
  Raphael Müller authored Jan 07, 2021
  
  1cb417ee
- publishdir is now a map; forgot nums · 17149463
  Raphael Müller authored Jan 07, 2021
  
  17149463
- fixed linter issues · b654b920
  Raphael Müller authored Jan 07, 2021
  
  b654b920
- added linter to dev env · 33649c6c
  Raphael Müller authored Jan 07, 2021
  
  33649c6c
- Update README.md · c696c3fe
  Raphael Müller authored Jan 07, 2021
  
  c696c3fe
- Update README.md · ce64e1d5
  Raphael Müller authored Jan 07, 2021
  
  ce64e1d5
06 Jan, 2021 18 commits
- Merge branch 'graph-mermaid' into 'master' · 70ac244f
  Raphael Müller authored Jan 06, 2021
```
Graph mermaid

See merge request !1
```
  70ac244f
- Graph mermaid · 7ec7dba2
  Raphael Müller authored Jan 06, 2021
  
  7ec7dba2
- first graph · d8bbc2fb
  Raphael Müller authored Jan 06, 2021
  
  d8bbc2fb
- added nextflow logfiles to .gitignore · 417e0bb8
  Raphael Müller authored Jan 06, 2021
  
  417e0bb8
- moved nextflow config to test · 511430da
  Raphael Müller authored Jan 06, 2021
  
  511430da
- tenary operator indentation · 509bd3b0
  Raphael Müller authored Jan 06, 2021
  
  509bd3b0
- removed rmueller dependent files · a9597c30
  Raphael Müller authored Jan 06, 2021
  
  a9597c30
- minor formatting things · e30c987f
  Raphael Müller authored Jan 06, 2021
  
  e30c987f
- exit status 1 not 1234 · daf75846
  Raphael Müller authored Jan 06, 2021
  
  daf75846
- minor indentation fixes · 0021413e
  Raphael Müller authored Jan 06, 2021
  
  0021413e
- added directory structure · 3bbb0288
  Raphael Müller authored Jan 06, 2021
  
  3bbb0288
- typo · 5ffca00f
  Raphael Müller authored Jan 06, 2021
  
  5ffca00f
- removed Rall pdfs from Readme · ba96a47a
  Raphael Müller authored Jan 06, 2021
  
  ba96a47a
- removed unnecessary scripts · cd77d3af
  Raphael Müller authored Jan 06, 2021
  
  cd77d3af
- added folder for test dataset · 02c7302f
  Raphael Müller authored Jan 06, 2021
  
  02c7302f
- changed directory structure: tests go2 test/ · 82ff70c4
  Raphael Müller authored Jan 06, 2021
  
  82ff70c4
- added space for footnotes · b87fd4ea
  Raphael Müller authored Jan 06, 2021
  
  b87fd4ea
- more dependencies in green. added footnote for green dependencies · 0a0a832a
  Raphael Müller authored Jan 06, 2021
  
  0a0a832a