Linting
-
0 info The tab character is not allowed in source files NoTabCharacter -
2 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines -
4 info Class should be marked with one of @GrailsCompileStatic, @CompileStatic or @CompileDynamic CompileStatic -
4 info The String 'v0.4' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
12 info Line ends with whitespace characters TrailingWhitespace -
15 info Line ends with whitespace characters TrailingWhitespace -
20 info Line ends with whitespace characters TrailingWhitespace -
27 info Line ends with whitespace characters TrailingWhitespace -
31 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines -
41 info Line ends with whitespace characters TrailingWhitespace -
60 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines -
63 info Line ends with whitespace characters TrailingWhitespace -
73 info The String 'assembly' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
75 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
75 info The String 'single-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
76 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
76 info The String 'paired-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
77 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
77 info The String 'pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
78 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
78 info The String 'nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
80 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
80 info The String 'illumina-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
81 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
81 info The String 'pacbio-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
82 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
82 info The String 'nanopore-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
84 info The String 'file-separator' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
84 info The String ',' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
86 info The String 'output' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
87 info The String 'prefix' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
87 info The String 'tbg_backmap' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
88 info The String 'threads' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
90 info The String 'keep-temporary' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
91 info The String 'help' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
92 info The String 'version' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
93 info The String 'debug' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
95 info The String 'skip-quality-control' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
96 info The String 'skip-coverage-histogram' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
97 info The String 'skip-genome-size-estimation' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
99 info The String 'bwa-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
99 info The String '-a -c 10000' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
100 info The String 'minimap-pacbio-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
100 info The String '-H' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
101 info The String 'minimap-nanopore-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
101 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
102 info The String 'qualimap-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
102 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
104 info Duplicate String Literal: assembly DuplicateStringLiteral -
104 info The String 'assembly' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
105 info Duplicate String Literal: single-end DuplicateStringLiteral -
105 info The String 'single-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
106 info Duplicate String Literal: paired-end DuplicateStringLiteral -
106 info Line ends with whitespace characters TrailingWhitespace -
106 info The String 'paired-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
107 info Duplicate String Literal: pacbio DuplicateStringLiteral -
107 info Line ends with whitespace characters TrailingWhitespace -
107 info The String 'pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
108 info Duplicate String Literal: nanopore DuplicateStringLiteral -
108 info Line ends with whitespace characters TrailingWhitespace -
108 info The String 'nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
110 info Duplicate String Literal: illumina-bam-files DuplicateStringLiteral -
110 info Line ends with whitespace characters TrailingWhitespace -
110 info The String 'illumina-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
111 info Duplicate String Literal: pacbio-bam-files DuplicateStringLiteral -
111 info Line ends with whitespace characters TrailingWhitespace -
111 info The String 'pacbio-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
112 info Duplicate String Literal: nanopore-bam-files DuplicateStringLiteral -
112 info Line ends with whitespace characters TrailingWhitespace -
112 info The String 'nanopore-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
114 info Duplicate String Literal: file-separator DuplicateStringLiteral -
114 info The String 'file-separator' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
116 info Duplicate String Literal: output DuplicateStringLiteral -
116 info The String 'output' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
117 info Duplicate String Literal: prefix DuplicateStringLiteral -
117 info The String 'prefix' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
118 info Duplicate String Literal: threads DuplicateStringLiteral -
118 info The String 'threads' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
120 info Duplicate String Literal: bwa-options DuplicateStringLiteral -
120 info The String 'bwa-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
121 info Duplicate String Literal: minimap-pacbio-options DuplicateStringLiteral -
121 info The String 'minimap-pacbio-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
122 info Duplicate String Literal: minimap-nanopore-options DuplicateStringLiteral -
122 info The String 'minimap-nanopore-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
123 info Duplicate String Literal: qualimap-options DuplicateStringLiteral -
123 info The String 'qualimap-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
125 info Duplicate String Literal: keep-temporary DuplicateStringLiteral -
125 info The String 'keep-temporary' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
126 info Duplicate String Literal: help DuplicateStringLiteral -
126 info The String 'help' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
127 info Duplicate String Literal: version DuplicateStringLiteral -
127 info The String 'version' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
128 info Duplicate String Literal: debug DuplicateStringLiteral -
128 info The String 'debug' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
130 info Duplicate String Literal: skip-quality-control DuplicateStringLiteral -
130 info The String 'skip-quality-control' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
131 info Duplicate String Literal: skip-coverage-histogram DuplicateStringLiteral -
131 info The String 'skip-coverage-histogram' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
132 info Duplicate String Literal: skip-genome-size-estimation DuplicateStringLiteral -
132 info The String 'skip-genome-size-estimation' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
134 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
135 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
136 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
137 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
138 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
139 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
139 info Line ends with whitespace characters TrailingWhitespace -
140 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
140 info Line ends with whitespace characters TrailingWhitespace -
141 info Duplicate String Literal: NO_FILE DuplicateStringLiteral -
141 info Line ends with whitespace characters TrailingWhitespace -
145 warning The expression (!!keepTemporaryFiles) is a confusing double negative DoubleNegative -
145 warning The expression (!!keepTemporaryFiles) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators -
146 warning The expression (!!printHelp) is a confusing double negative DoubleNegative -
146 warning The expression (!!printHelp) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators -
147 warning The expression (!!printVersion) is a confusing double negative DoubleNegative -
147 warning The expression (!!printVersion) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators -
149 info Line ends with whitespace characters TrailingWhitespace -
150 info Line ends with whitespace characters TrailingWhitespace -
151 info Line ends with whitespace characters TrailingWhitespace -
153 info The if keyword within class None is not followed by a single space SpaceAfterIf -
153 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
154 info The statement on line 154 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
154 info The String 'Files:' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
155 info The statement on line 155 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
155 info Line ends with whitespace characters TrailingWhitespace -
156 info The statement on line 156 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
156 info Line ends with whitespace characters TrailingWhitespace -
157 info The statement on line 157 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
157 info Line ends with whitespace characters TrailingWhitespace -
158 info The statement on line 158 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
158 info Line ends with whitespace characters TrailingWhitespace -
159 info The statement on line 159 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
159 info Line ends with whitespace characters TrailingWhitespace -
160 info The statement on line 160 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
161 info The statement on line 161 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
162 info The statement on line 162 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
163 info The statement on line 163 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
163 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
164 info The statement on line 164 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
164 info The String 'Additional Tool Options:' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
165 info The statement on line 165 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
166 info The statement on line 166 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
167 info The statement on line 167 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
168 info The statement on line 168 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
169 info The statement on line 169 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
169 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
170 info The statement on line 170 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
170 info The String 'Control flow instructions:' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
171 info The statement on line 171 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
172 info The statement on line 172 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
173 info The statement on line 173 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
174 info The statement on line 174 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
174 info The String 'Misc:' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
175 info The statement on line 175 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
176 info The statement on line 176 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
177 info The statement on line 177 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
178 info The statement on line 178 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
179 info The statement on line 179 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
180 info The statement on line 180 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
181 info The statement on line 181 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
182 info The statement on line 182 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
183 info The statement on line 183 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
183 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
184 info The statement on line 184 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
184 info The String 'Inner Boolean Vars:' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
185 info The statement on line 185 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
186 info The statement on line 186 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
187 info The statement on line 187 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
188 info The statement on line 188 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
189 info The statement on line 189 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
190 info The statement on line 190 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
191 info The statement on line 191 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
192 info The statement on line 192 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
193 info The statement on line 193 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
194 info The statement on line 194 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
194 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
197 info The if keyword within class None is not followed by a single space SpaceAfterIf -
197 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
198 info The statement on line 198 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
199 info The statement on line 199 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
202 info The if keyword within class None is not followed by a single space SpaceAfterIf -
202 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
203 info The statement on line 203 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
204 info The statement on line 204 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
208 warning Variable named BWAINDEX in class None does not match the pattern [a-z][a-zA-Z0-9]* VariableName -
214 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
214 info The if keyword within class None is not followed by a single space SpaceAfterIf -
214 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
215 info Code block starts with a blank line. BlockStartsWithBlankLine -
216 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
216 info The statement on line 216 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
216 warning The line exceeds 120 characters. The line is 162 characters. LineLength -
216 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
216 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
216 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
216 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
216 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
216 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
217 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
217 info The statement on line 217 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
217 warning The line exceeds 120 characters. The line is 162 characters. LineLength -
217 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
217 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
217 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
217 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
217 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
217 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
218 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
218 info The statement on line 218 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
218 warning The line exceeds 120 characters. The line is 162 characters. LineLength -
218 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
218 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
218 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
218 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
218 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
218 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
219 info Code block ends with a blank line. BlockEndsWithBlankLine -
220 info The if keyword within class None is not followed by a single space SpaceAfterIf -
220 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
222 info The statement on line 222 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
223 info The statement on line 223 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
225 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
225 info The statement on line 225 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
225 warning The line exceeds 120 characters. The line is 164 characters. LineLength -
225 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
225 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
225 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
225 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
225 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
225 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
226 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
226 info The statement on line 226 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
226 warning The line exceeds 120 characters. The line is 164 characters. LineLength -
226 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
226 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
226 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
226 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
226 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
226 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
227 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
227 info The statement on line 227 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
227 warning The line exceeds 120 characters. The line is 164 characters. LineLength -
227 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
227 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
227 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
227 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
227 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
227 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
228 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
228 info The statement on line 228 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
228 warning The line exceeds 120 characters. The line is 164 characters. LineLength -
228 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
228 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
228 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
228 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
228 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
228 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
231 info The statement on line 231 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
231 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
232 info The statement on line 232 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
232 info The String '*{amb,ann,bwt,pac,sa}' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
233 info Duplicate String Literal: copy DuplicateStringLiteral -
233 info The statement on line 233 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
233 info The String '*.{log,err}' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
234 info The statement on line 234 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
236 info The statement on line 236 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
238 info The statement on line 238 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
239 info The statement on line 239 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
241 info The statement on line 241 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
246 info Line ends with whitespace characters TrailingWhitespace -
247 info The statement on line 247 in class None is at the incorrect indent level: Expected column 5 but was 4 Indentation -
247 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
248 info The statement on line 248 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
249 info The statement on line 249 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
249 info The if keyword within class None is not followed by a single space SpaceAfterIf -
249 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
250 info Duplicate String Literal: copy DuplicateStringLiteral -
250 info The statement on line 250 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
253 info The statement on line 253 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
254 info The statement on line 254 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
256 info The statement on line 256 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
257 info The statement on line 257 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
257 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
259 info The statement on line 259 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
260 warning The line exceeds 120 characters. The line is 161 characters. LineLength -
265 info The statement on line 265 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
265 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
266 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
266 info The statement on line 266 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
267 info The statement on line 267 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
267 info The if keyword within class None is not followed by a single space SpaceAfterIf -
267 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
268 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
268 info Duplicate String Literal: copy DuplicateStringLiteral -
268 info The statement on line 268 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
271 info The statement on line 271 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
272 info The statement on line 272 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
274 info The statement on line 274 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
275 info Duplicate String Literal: *.err DuplicateStringLiteral -
275 info The statement on line 275 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
275 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
278 warning The line exceeds 120 characters. The line is 159 characters. LineLength -
282 info The statement on line 282 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
285 info The statement on line 285 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
285 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
286 info The statement on line 286 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
286 info The if keyword within class None is not followed by a single space SpaceAfterIf -
286 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
287 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
287 info Duplicate String Literal: copy DuplicateStringLiteral -
287 info The statement on line 287 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
289 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
289 info The statement on line 289 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
291 info The statement on line 291 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
292 info The statement on line 292 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
294 info The statement on line 294 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
295 info Duplicate String Literal: *.err DuplicateStringLiteral -
295 info The statement on line 295 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
295 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
297 info The statement on line 297 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
298 warning The line exceeds 120 characters. The line is 171 characters. LineLength -
303 info The statement on line 303 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
303 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
304 info The statement on line 304 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
304 info The if keyword within class None is not followed by a single space SpaceAfterIf -
304 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
305 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
305 info Duplicate String Literal: copy DuplicateStringLiteral -
305 info The statement on line 305 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
307 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
307 info The statement on line 307 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
309 info The statement on line 309 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
310 info The statement on line 310 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
312 info The statement on line 312 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
313 info Duplicate String Literal: *.err DuplicateStringLiteral -
313 info The statement on line 313 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
313 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
315 info The statement on line 315 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
316 warning The line exceeds 120 characters. The line is 175 characters. LineLength -
320 info The statement on line 320 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
320 info The String 'specify either reads to map with assembly or already mapped reads' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
321 info The statement on line 321 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
322 info The statement on line 322 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
326 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
327 info The statement on line 327 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
327 info The if keyword within class None is not followed by a single space SpaceAfterIf -
327 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
328 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
328 info Duplicate String Literal: copy DuplicateStringLiteral -
328 info The statement on line 328 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
330 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
330 info The statement on line 330 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
334 info The String 'Illumina' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
342 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
343 info The statement on line 343 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
343 info The if keyword within class None is not followed by a single space SpaceAfterIf -
343 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
344 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
344 info Duplicate String Literal: copy DuplicateStringLiteral -
344 info The statement on line 344 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
346 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
346 info The statement on line 346 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
350 info The String 'Pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
358 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
359 info The statement on line 359 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
359 info The if keyword within class None is not followed by a single space SpaceAfterIf -
359 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
360 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
360 info Duplicate String Literal: copy DuplicateStringLiteral -
360 info The statement on line 360 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
362 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
362 info The statement on line 362 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
366 info The String 'Nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
374 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
375 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
375 info Duplicate String Literal: copy DuplicateStringLiteral -
375 info The statement on line 375 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
377 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
377 info The statement on line 377 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation -
381 warning The line exceeds 120 characters. The line is 168 characters. LineLength -
387 info Line ends with whitespace characters TrailingWhitespace -
389 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
389 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
390 info The statement on line 390 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
390 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
391 info Code block starts with a blank line. BlockStartsWithBlankLine -
392 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
392 info Duplicate String Literal: copy DuplicateStringLiteral -
392 info The statement on line 392 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
394 info Duplicate Number Literal: 8 DuplicateNumberLiteral -
394 info The statement on line 394 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
396 info The statement on line 396 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
398 info The statement on line 398 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
399 info Duplicate String Literal: *.{log,err} DuplicateStringLiteral -
399 info The statement on line 399 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
399 info The String '*.{log,err}' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
401 info The statement on line 401 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
402 warning The line exceeds 120 characters. The line is 163 characters. LineLength -
407 info The statement on line 407 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
407 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
408 info Code block starts with a blank line. BlockStartsWithBlankLine -
409 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
409 info Duplicate String Literal: copy DuplicateStringLiteral -
409 info The statement on line 409 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
410 info The statement on line 410 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
412 info The statement on line 412 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
414 info The statement on line 414 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
414 info The String '*' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
416 info The statement on line 416 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
416 info The String ' -
multiqc -f -s -m qualimap -o . . > multiqc.log 2> multiqc.err -
' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
417 info Line ends with whitespace characters TrailingWhitespace -
422 info Line ends with whitespace characters TrailingWhitespace -
423 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
423 info The if keyword within class None is not followed by a single space SpaceAfterIf -
423 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
424 info Code block starts with a blank line. BlockStartsWithBlankLine -
425 info The statement on line 425 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
425 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
426 info The statement on line 426 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
427 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
427 info Duplicate String Literal: copy DuplicateStringLiteral -
427 info The statement on line 427 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
429 info The statement on line 429 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
431 info The statement on line 431 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
431 warning The line exceeds 120 characters. The line is 124 characters. LineLength -
433 info The statement on line 433 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
434 warning The line exceeds 120 characters. The line is 158 characters. LineLength -
438 info Line ends with whitespace characters TrailingWhitespace -
439 info The statement on line 439 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
440 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
440 info Duplicate String Literal: copy DuplicateStringLiteral -
440 info The statement on line 440 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
441 info The statement on line 441 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
443 info The statement on line 443 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
445 info The statement on line 445 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
445 info The String '*.pdf' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
447 info The statement on line 447 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
468 info The statement on line 468 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
468 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
468 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
470 info The statement on line 470 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
470 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
471 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
471 info Duplicate String Literal: copy DuplicateStringLiteral -
471 info The statement on line 471 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
472 info The statement on line 472 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
474 info The statement on line 474 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
475 info The statement on line 475 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
477 info Duplicate String Literal: *.pdf DuplicateStringLiteral -
477 info The statement on line 477 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
477 info The String '*.pdf' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
480 info The statement on line 480 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation -
480 info The operator "/" within class None is not preceded by a space or whitespace SpaceAroundOperator -
480 info The operator "/" within class None is not followed by a space or whitespace SpaceAroundOperator -
482 info The statement on line 482 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation -
502 info Line ends with whitespace characters TrailingWhitespace -
508 warning The line exceeds 120 characters. The line is 122 characters. LineLength -
513 warning The line exceeds 120 characters. The line is 154 characters. LineLength -
520 info The statement on line 520 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation -
520 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
520 info The if keyword within class None is not followed by a single space SpaceAfterIf -
520 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
522 info The statement on line 522 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
522 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
523 warning Map [mode:copy] is duplicated. DuplicateMapLiteral -
523 info Duplicate String Literal: copy DuplicateStringLiteral -
523 info The statement on line 523 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation -
524 info The statement on line 524 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation -
526 info The statement on line 526 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
526 info Line ends with whitespace characters TrailingWhitespace -
528 info The statement on line 528 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
528 info The String '*.stats' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
529 info Duplicate String Literal: *.err DuplicateStringLiteral -
529 info The statement on line 529 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
529 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
531 info The statement on line 531 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
537 info The statement on line 537 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
537 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
538 info The statement on line 538 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation -
540 info The statement on line 540 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
542 info The statement on line 542 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
544 info The statement on line 544 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
550 info The statement on line 550 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
550 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
551 info The statement on line 551 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation -
553 info The statement on line 553 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
555 info The statement on line 555 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
557 info The statement on line 557 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation -
562 info The statement on line 562 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation -
562 info The if keyword within class None is not followed by a single space SpaceAfterIf -
562 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
564 info The statement on line 564 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
565 info The statement on line 565 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
565 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
566 info The statement on line 566 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 9 Indentation -
568 info The statement on line 568 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation -
570 info The statement on line 570 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation -
572 info The statement on line 572 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation -
576 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
577 info The statement on line 577 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation -
577 info Line ends with whitespace characters TrailingWhitespace -
577 info The String '0' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
583 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
583 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
583 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
583 info The statement on line 583 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation -
583 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
583 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
583 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
584 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
584 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
584 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
584 info The statement on line 584 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation -
584 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
584 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
584 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
585 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
585 info The statement on line 585 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation -
585 warning The line exceeds 120 characters. The line is 169 characters. LineLength -
585 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
586 info Line ends with whitespace characters TrailingWhitespace -
588 info The statement on line 588 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation -
588 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
588 info Line ends with whitespace characters TrailingWhitespace -
589 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
589 info The statement on line 589 in class None is at the incorrect indent level: Expected column 13 but was 5 Indentation -
590 info The statement on line 590 in class None is at the incorrect indent level: Expected column 13 but was 5 Indentation -
590 warning The instanceof operator is used in class None Instanceof -
590 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace -
591 info The statement on line 591 in class None is at the incorrect indent level: Expected column 17 but was 7 Indentation -
591 info The String '%,.0f' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
591 info Semicolons as line endings can be removed safely UnnecessarySemicolon -
592 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
593 info The statement on line 593 in class None is at the incorrect indent level: Expected column 17 but was 7 Indentation -
593 info The String '%,d' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
593 info Semicolons as line endings can be removed safely UnnecessarySemicolon -
594 info Line ends with whitespace characters TrailingWhitespace -
597 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
597 info The statement on line 597 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation -
597 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace -
597 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace -
597 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
597 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
597 info Line ends with whitespace characters TrailingWhitespace -
598 info The statement on line 598 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation -
601 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
601 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
602 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
603 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
603 info Line ends with whitespace characters TrailingWhitespace -
604 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
604 info Semicolons as line endings can be removed safely UnnecessarySemicolon -
605 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
605 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
605 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
605 info The statement on line 605 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation -
605 info The if keyword within class None is not followed by a single space SpaceAfterIf -
605 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace -
606 info The statement on line 606 in class None is at the incorrect indent level: Expected column 17 but was 5 Indentation -
607 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
607 info Duplicate Number Literal: 0 DuplicateNumberLiteral -
607 info Duplicate Number Literal: 5 DuplicateNumberLiteral -
607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter -
607 info The parameter ((it[0] / it[5]) * 100.0) in the call to method format within class None is not preceded by a space or whitespace SpaceAfterComma -
607 info The String '%.2f' can be wrapped in single quotes instead of double quotes UnnecessaryGString -
608 info Semicolons as line endings can be removed safely UnnecessarySemicolon -
610 info The statement on line 610 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation -
613 info The statement on line 613 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
Edited by Raphael Müller