Linting

  • 0 info The tab character is not allowed in source files NoTabCharacter
  • 2 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines
  • 4 info Class should be marked with one of @GrailsCompileStatic, @CompileStatic or @CompileDynamic CompileStatic
  • 4 info The String 'v0.4' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 12 info Line ends with whitespace characters TrailingWhitespace
  • 15 info Line ends with whitespace characters TrailingWhitespace
  • 20 info Line ends with whitespace characters TrailingWhitespace
  • 27 info Line ends with whitespace characters TrailingWhitespace
  • 31 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines
  • 41 info Line ends with whitespace characters TrailingWhitespace
  • 60 info File backmap.nf has consecutive blank lines ConsecutiveBlankLines
  • 63 info Line ends with whitespace characters TrailingWhitespace
  • 73 info The String 'assembly' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 75 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 75 info The String 'single-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 76 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 76 info The String 'paired-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 77 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 77 info The String 'pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 78 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 78 info The String 'nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 80 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 80 info The String 'illumina-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 81 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 81 info The String 'pacbio-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 82 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 82 info The String 'nanopore-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 84 info The String 'file-separator' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 84 info The String ',' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 86 info The String 'output' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 87 info The String 'prefix' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 87 info The String 'tbg_backmap' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 88 info The String 'threads' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 90 info The String 'keep-temporary' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 91 info The String 'help' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 92 info The String 'version' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 93 info The String 'debug' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 95 info The String 'skip-quality-control' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 96 info The String 'skip-coverage-histogram' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 97 info The String 'skip-genome-size-estimation' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 99 info The String 'bwa-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 99 info The String '-a -c 10000' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 100 info The String 'minimap-pacbio-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 100 info The String '-H' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 101 info The String 'minimap-nanopore-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 101 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 102 info The String 'qualimap-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 102 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 104 info Duplicate String Literal: assembly DuplicateStringLiteral
  • 104 info The String 'assembly' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 105 info Duplicate String Literal: single-end DuplicateStringLiteral
  • 105 info The String 'single-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 106 info Duplicate String Literal: paired-end DuplicateStringLiteral
  • 106 info Line ends with whitespace characters TrailingWhitespace
  • 106 info The String 'paired-end' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 107 info Duplicate String Literal: pacbio DuplicateStringLiteral
  • 107 info Line ends with whitespace characters TrailingWhitespace
  • 107 info The String 'pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 108 info Duplicate String Literal: nanopore DuplicateStringLiteral
  • 108 info Line ends with whitespace characters TrailingWhitespace
  • 108 info The String 'nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 110 info Duplicate String Literal: illumina-bam-files DuplicateStringLiteral
  • 110 info Line ends with whitespace characters TrailingWhitespace
  • 110 info The String 'illumina-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 111 info Duplicate String Literal: pacbio-bam-files DuplicateStringLiteral
  • 111 info Line ends with whitespace characters TrailingWhitespace
  • 111 info The String 'pacbio-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 112 info Duplicate String Literal: nanopore-bam-files DuplicateStringLiteral
  • 112 info Line ends with whitespace characters TrailingWhitespace
  • 112 info The String 'nanopore-bam-files' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 114 info Duplicate String Literal: file-separator DuplicateStringLiteral
  • 114 info The String 'file-separator' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 116 info Duplicate String Literal: output DuplicateStringLiteral
  • 116 info The String 'output' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 117 info Duplicate String Literal: prefix DuplicateStringLiteral
  • 117 info The String 'prefix' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 118 info Duplicate String Literal: threads DuplicateStringLiteral
  • 118 info The String 'threads' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 120 info Duplicate String Literal: bwa-options DuplicateStringLiteral
  • 120 info The String 'bwa-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 121 info Duplicate String Literal: minimap-pacbio-options DuplicateStringLiteral
  • 121 info The String 'minimap-pacbio-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 122 info Duplicate String Literal: minimap-nanopore-options DuplicateStringLiteral
  • 122 info The String 'minimap-nanopore-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 123 info Duplicate String Literal: qualimap-options DuplicateStringLiteral
  • 123 info The String 'qualimap-options' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 125 info Duplicate String Literal: keep-temporary DuplicateStringLiteral
  • 125 info The String 'keep-temporary' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 126 info Duplicate String Literal: help DuplicateStringLiteral
  • 126 info The String 'help' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 127 info Duplicate String Literal: version DuplicateStringLiteral
  • 127 info The String 'version' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 128 info Duplicate String Literal: debug DuplicateStringLiteral
  • 128 info The String 'debug' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 130 info Duplicate String Literal: skip-quality-control DuplicateStringLiteral
  • 130 info The String 'skip-quality-control' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 131 info Duplicate String Literal: skip-coverage-histogram DuplicateStringLiteral
  • 131 info The String 'skip-coverage-histogram' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 132 info Duplicate String Literal: skip-genome-size-estimation DuplicateStringLiteral
  • 132 info The String 'skip-genome-size-estimation' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 134 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 135 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 136 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 137 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 138 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 139 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 139 info Line ends with whitespace characters TrailingWhitespace
  • 140 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 140 info Line ends with whitespace characters TrailingWhitespace
  • 141 info Duplicate String Literal: NO_FILE DuplicateStringLiteral
  • 141 info Line ends with whitespace characters TrailingWhitespace
  • 145 warning The expression (!!keepTemporaryFiles) is a confusing double negative DoubleNegative
  • 145 warning The expression (!!keepTemporaryFiles) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators
  • 146 warning The expression (!!printHelp) is a confusing double negative DoubleNegative
  • 146 warning The expression (!!printHelp) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators
  • 147 warning The expression (!!printVersion) is a confusing double negative DoubleNegative
  • 147 warning The expression (!!printVersion) in class None contains confusing multiple consecutive unary operators MultipleUnaryOperators
  • 149 info Line ends with whitespace characters TrailingWhitespace
  • 150 info Line ends with whitespace characters TrailingWhitespace
  • 151 info Line ends with whitespace characters TrailingWhitespace
  • 153 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 153 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 154 info The statement on line 154 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 154 info The String 'Files:' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 155 info The statement on line 155 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 155 info Line ends with whitespace characters TrailingWhitespace
  • 156 info The statement on line 156 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 156 info Line ends with whitespace characters TrailingWhitespace
  • 157 info The statement on line 157 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 157 info Line ends with whitespace characters TrailingWhitespace
  • 158 info The statement on line 158 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 158 info Line ends with whitespace characters TrailingWhitespace
  • 159 info The statement on line 159 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 159 info Line ends with whitespace characters TrailingWhitespace
  • 160 info The statement on line 160 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 161 info The statement on line 161 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 162 info The statement on line 162 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 163 info The statement on line 163 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 163 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 164 info The statement on line 164 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 164 info The String 'Additional Tool Options:' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 165 info The statement on line 165 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 166 info The statement on line 166 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 167 info The statement on line 167 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 168 info The statement on line 168 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 169 info The statement on line 169 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 169 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 170 info The statement on line 170 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 170 info The String 'Control flow instructions:' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 171 info The statement on line 171 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 172 info The statement on line 172 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 173 info The statement on line 173 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 174 info The statement on line 174 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 174 info The String 'Misc:' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 175 info The statement on line 175 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 176 info The statement on line 176 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 177 info The statement on line 177 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 178 info The statement on line 178 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 179 info The statement on line 179 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 180 info The statement on line 180 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 181 info The statement on line 181 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 182 info The statement on line 182 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 183 info The statement on line 183 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 183 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 184 info The statement on line 184 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 184 info The String 'Inner Boolean Vars:' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 185 info The statement on line 185 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 186 info The statement on line 186 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 187 info The statement on line 187 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 188 info The statement on line 188 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 189 info The statement on line 189 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 190 info The statement on line 190 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 191 info The statement on line 191 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 192 info The statement on line 192 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 193 info The statement on line 193 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 194 info The statement on line 194 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 194 info The String '' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 197 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 197 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 198 info The statement on line 198 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 199 info The statement on line 199 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 202 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 202 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 203 info The statement on line 203 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 204 info The statement on line 204 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 208 warning Variable named BWAINDEX in class None does not match the pattern [a-z][a-zA-Z0-9]* VariableName
  • 214 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 214 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 214 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 215 info Code block starts with a blank line. BlockStartsWithBlankLine
  • 216 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 216 info The statement on line 216 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 216 warning The line exceeds 120 characters. The line is 162 characters. LineLength
  • 216 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 216 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 216 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 216 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 216 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 216 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 217 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 217 info The statement on line 217 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 217 warning The line exceeds 120 characters. The line is 162 characters. LineLength
  • 217 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 217 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 217 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 217 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 217 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 217 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 218 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 218 info The statement on line 218 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 218 warning The line exceeds 120 characters. The line is 162 characters. LineLength
  • 218 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 218 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 218 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 218 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 218 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 218 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 219 info Code block ends with a blank line. BlockEndsWithBlankLine
  • 220 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 220 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 222 info The statement on line 222 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 223 info The statement on line 223 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 225 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 225 info The statement on line 225 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 225 warning The line exceeds 120 characters. The line is 164 characters. LineLength
  • 225 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 225 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 225 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 225 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 225 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 225 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 226 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 226 info The statement on line 226 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 226 warning The line exceeds 120 characters. The line is 164 characters. LineLength
  • 226 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 226 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 226 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 226 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 226 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 226 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 227 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 227 info The statement on line 227 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 227 warning The line exceeds 120 characters. The line is 164 characters. LineLength
  • 227 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 227 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 227 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 227 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 227 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 227 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 228 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 228 info The statement on line 228 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 228 warning The line exceeds 120 characters. The line is 164 characters. LineLength
  • 228 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 228 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 228 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 228 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 228 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 228 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 231 info The statement on line 231 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 231 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 232 info The statement on line 232 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 232 info The String '*{amb,ann,bwt,pac,sa}' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 233 info Duplicate String Literal: copy DuplicateStringLiteral
  • 233 info The statement on line 233 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 233 info The String '*.{log,err}' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 234 info The statement on line 234 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 236 info The statement on line 236 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 238 info The statement on line 238 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 239 info The statement on line 239 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 241 info The statement on line 241 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 246 info Line ends with whitespace characters TrailingWhitespace
  • 247 info The statement on line 247 in class None is at the incorrect indent level: Expected column 5 but was 4 Indentation
  • 247 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 248 info The statement on line 248 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 249 info The statement on line 249 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 249 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 249 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 250 info Duplicate String Literal: copy DuplicateStringLiteral
  • 250 info The statement on line 250 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 253 info The statement on line 253 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 254 info The statement on line 254 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 256 info The statement on line 256 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 257 info The statement on line 257 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 257 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 259 info The statement on line 259 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 260 warning The line exceeds 120 characters. The line is 161 characters. LineLength
  • 265 info The statement on line 265 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 265 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 266 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 266 info The statement on line 266 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 267 info The statement on line 267 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 267 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 267 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 268 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 268 info Duplicate String Literal: copy DuplicateStringLiteral
  • 268 info The statement on line 268 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 271 info The statement on line 271 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 272 info The statement on line 272 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 274 info The statement on line 274 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 275 info Duplicate String Literal: *.err DuplicateStringLiteral
  • 275 info The statement on line 275 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 275 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 278 warning The line exceeds 120 characters. The line is 159 characters. LineLength
  • 282 info The statement on line 282 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 285 info The statement on line 285 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 285 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 286 info The statement on line 286 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 286 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 286 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 287 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 287 info Duplicate String Literal: copy DuplicateStringLiteral
  • 287 info The statement on line 287 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 289 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 289 info The statement on line 289 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 291 info The statement on line 291 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 292 info The statement on line 292 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 294 info The statement on line 294 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 295 info Duplicate String Literal: *.err DuplicateStringLiteral
  • 295 info The statement on line 295 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 295 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 297 info The statement on line 297 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 298 warning The line exceeds 120 characters. The line is 171 characters. LineLength
  • 303 info The statement on line 303 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 303 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 304 info The statement on line 304 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 304 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 304 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 305 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 305 info Duplicate String Literal: copy DuplicateStringLiteral
  • 305 info The statement on line 305 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 307 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 307 info The statement on line 307 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 309 info The statement on line 309 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 310 info The statement on line 310 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 312 info The statement on line 312 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 313 info Duplicate String Literal: *.err DuplicateStringLiteral
  • 313 info The statement on line 313 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 313 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 315 info The statement on line 315 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 316 warning The line exceeds 120 characters. The line is 175 characters. LineLength
  • 320 info The statement on line 320 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 320 info The String 'specify either reads to map with assembly or already mapped reads' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 321 info The statement on line 321 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 322 info The statement on line 322 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 326 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 327 info The statement on line 327 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 327 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 327 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 328 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 328 info Duplicate String Literal: copy DuplicateStringLiteral
  • 328 info The statement on line 328 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 330 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 330 info The statement on line 330 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 334 info The String 'Illumina' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 342 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 343 info The statement on line 343 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 343 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 343 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 344 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 344 info Duplicate String Literal: copy DuplicateStringLiteral
  • 344 info The statement on line 344 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 346 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 346 info The statement on line 346 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 350 info The String 'Pacbio' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 358 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 359 info The statement on line 359 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 359 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 359 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 360 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 360 info Duplicate String Literal: copy DuplicateStringLiteral
  • 360 info The statement on line 360 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 362 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 362 info The statement on line 362 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 366 info The String 'Nanopore' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 374 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 375 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 375 info Duplicate String Literal: copy DuplicateStringLiteral
  • 375 info The statement on line 375 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 377 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 377 info The statement on line 377 in class None is at the incorrect indent level: Expected one of columns [5, 9, 13] but was 3 Indentation
  • 381 warning The line exceeds 120 characters. The line is 168 characters. LineLength
  • 387 info Line ends with whitespace characters TrailingWhitespace
  • 389 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 389 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 390 info The statement on line 390 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 390 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 391 info Code block starts with a blank line. BlockStartsWithBlankLine
  • 392 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 392 info Duplicate String Literal: copy DuplicateStringLiteral
  • 392 info The statement on line 392 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 394 info Duplicate Number Literal: 8 DuplicateNumberLiteral
  • 394 info The statement on line 394 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 396 info The statement on line 396 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 398 info The statement on line 398 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 399 info Duplicate String Literal: *.{log,err} DuplicateStringLiteral
  • 399 info The statement on line 399 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 399 info The String '*.{log,err}' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 401 info The statement on line 401 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 402 warning The line exceeds 120 characters. The line is 163 characters. LineLength
  • 407 info The statement on line 407 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 407 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 408 info Code block starts with a blank line. BlockStartsWithBlankLine
  • 409 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 409 info Duplicate String Literal: copy DuplicateStringLiteral
  • 409 info The statement on line 409 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 410 info The statement on line 410 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 412 info The statement on line 412 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 414 info The statement on line 414 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 414 info The String '*' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 416 info The statement on line 416 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 416 info The String '
  • multiqc -f -s -m qualimap -o . . > multiqc.log 2> multiqc.err
  • ' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 417 info Line ends with whitespace characters TrailingWhitespace
  • 422 info Line ends with whitespace characters TrailingWhitespace
  • 423 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 423 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 423 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 424 info Code block starts with a blank line. BlockStartsWithBlankLine
  • 425 info The statement on line 425 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 425 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 426 info The statement on line 426 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 427 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 427 info Duplicate String Literal: copy DuplicateStringLiteral
  • 427 info The statement on line 427 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 429 info The statement on line 429 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 431 info The statement on line 431 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 431 warning The line exceeds 120 characters. The line is 124 characters. LineLength
  • 433 info The statement on line 433 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 434 warning The line exceeds 120 characters. The line is 158 characters. LineLength
  • 438 info Line ends with whitespace characters TrailingWhitespace
  • 439 info The statement on line 439 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 440 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 440 info Duplicate String Literal: copy DuplicateStringLiteral
  • 440 info The statement on line 440 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 441 info The statement on line 441 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 443 info The statement on line 443 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 445 info The statement on line 445 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 445 info The String '*.pdf' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 447 info The statement on line 447 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 468 info The statement on line 468 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 468 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 468 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 470 info The statement on line 470 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 470 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 471 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 471 info Duplicate String Literal: copy DuplicateStringLiteral
  • 471 info The statement on line 471 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 472 info The statement on line 472 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 474 info The statement on line 474 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 475 info The statement on line 475 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 477 info Duplicate String Literal: *.pdf DuplicateStringLiteral
  • 477 info The statement on line 477 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 477 info The String '*.pdf' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 480 info The statement on line 480 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 7 Indentation
  • 480 info The operator "/" within class None is not preceded by a space or whitespace SpaceAroundOperator
  • 480 info The operator "/" within class None is not followed by a space or whitespace SpaceAroundOperator
  • 482 info The statement on line 482 in class None is at the incorrect indent level: Expected one of columns [9, 13, 17] but was 5 Indentation
  • 502 info Line ends with whitespace characters TrailingWhitespace
  • 508 warning The line exceeds 120 characters. The line is 122 characters. LineLength
  • 513 warning The line exceeds 120 characters. The line is 154 characters. LineLength
  • 520 info The statement on line 520 in class None is at the incorrect indent level: Expected column 5 but was 3 Indentation
  • 520 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 520 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 520 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 522 info The statement on line 522 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 522 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 523 warning Map [mode:copy] is duplicated. DuplicateMapLiteral
  • 523 info Duplicate String Literal: copy DuplicateStringLiteral
  • 523 info The statement on line 523 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation
  • 524 info The statement on line 524 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation
  • 526 info The statement on line 526 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 526 info Line ends with whitespace characters TrailingWhitespace
  • 528 info The statement on line 528 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 528 info The String '*.stats' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 529 info Duplicate String Literal: *.err DuplicateStringLiteral
  • 529 info The statement on line 529 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 529 info The String '*.err' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 531 info The statement on line 531 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 537 info The statement on line 537 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 537 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 538 info The statement on line 538 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation
  • 540 info The statement on line 540 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 542 info The statement on line 542 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 544 info The statement on line 544 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 550 info The statement on line 550 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 550 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 551 info The statement on line 551 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 7 Indentation
  • 553 info The statement on line 553 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 555 info The statement on line 555 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 557 info The statement on line 557 in class None is at the incorrect indent level: Expected one of columns [13, 17, 21] but was 9 Indentation
  • 562 info The statement on line 562 in class None is at the incorrect indent level: Expected column 9 but was 5 Indentation
  • 562 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 562 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 564 info The statement on line 564 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 565 info The statement on line 565 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 565 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 566 info The statement on line 566 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 9 Indentation
  • 568 info The statement on line 568 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation
  • 570 info The statement on line 570 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation
  • 572 info The statement on line 572 in class None is at the incorrect indent level: Expected one of columns [17, 21, 25] but was 11 Indentation
  • 576 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 577 info The statement on line 577 in class None is at the incorrect indent level: Expected column 13 but was 7 Indentation
  • 577 info Line ends with whitespace characters TrailingWhitespace
  • 577 info The String '0' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 583 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 583 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 583 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 583 info The statement on line 583 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
  • 583 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 583 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 583 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 584 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 584 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 584 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 584 info The statement on line 584 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
  • 584 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 584 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 584 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 585 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 585 info The statement on line 585 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
  • 585 warning The line exceeds 120 characters. The line is 169 characters. LineLength
  • 585 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 586 info Line ends with whitespace characters TrailingWhitespace
  • 588 info The statement on line 588 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
  • 588 info The closing brace for the closure in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 588 info Line ends with whitespace characters TrailingWhitespace
  • 589 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 589 info The statement on line 589 in class None is at the incorrect indent level: Expected column 13 but was 5 Indentation
  • 590 info The statement on line 590 in class None is at the incorrect indent level: Expected column 13 but was 5 Indentation
  • 590 warning The instanceof operator is used in class None Instanceof
  • 590 info The closing brace for the block in class None is not followed by a space or whitespace SpaceAfterClosingBrace
  • 591 info The statement on line 591 in class None is at the incorrect indent level: Expected column 17 but was 7 Indentation
  • 591 info The String '%,.0f' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 591 info Semicolons as line endings can be removed safely UnnecessarySemicolon
  • 592 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 593 info The statement on line 593 in class None is at the incorrect indent level: Expected column 17 but was 7 Indentation
  • 593 info The String '%,d' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 593 info Semicolons as line endings can be removed safely UnnecessarySemicolon
  • 594 info Line ends with whitespace characters TrailingWhitespace
  • 597 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 597 info The statement on line 597 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
  • 597 info The opening brace for the closure in class None is not followed by a space or whitespace SpaceAfterOpeningBrace
  • 597 info The closing brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeClosingBrace
  • 597 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 597 info The opening brace for the closure in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 597 info Line ends with whitespace characters TrailingWhitespace
  • 598 info The statement on line 598 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation
  • 601 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 601 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 602 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 603 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 603 info Line ends with whitespace characters TrailingWhitespace
  • 604 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 604 info Semicolons as line endings can be removed safely UnnecessarySemicolon
  • 605 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 605 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 605 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 605 info The statement on line 605 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation
  • 605 info The if keyword within class None is not followed by a single space SpaceAfterIf
  • 605 info The opening brace for the block in class None is not preceded by a space or whitespace SpaceBeforeOpeningBrace
  • 606 info The statement on line 606 in class None is at the incorrect indent level: Expected column 17 but was 5 Indentation
  • 607 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 607 info Duplicate Number Literal: 0 DuplicateNumberLiteral
  • 607 info Duplicate Number Literal: 5 DuplicateNumberLiteral
  • 607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 607 info By convention closure parameters should be specified explicitly. ImplicitClosureParameter
  • 607 info The parameter ((it[0] / it[5]) * 100.0) in the call to method format within class None is not preceded by a space or whitespace SpaceAfterComma
  • 607 info The String '%.2f' can be wrapped in single quotes instead of double quotes UnnecessaryGString
  • 608 info Semicolons as line endings can be removed safely UnnecessarySemicolon
  • 610 info The statement on line 610 in class None is at the incorrect indent level: Depending on your chaining style, expected one of [13, 17, 21] or one of [92, 96, 100] columns, but was 5 Indentation
  • 613 info The statement on line 613 in class None is at the incorrect indent level: Expected column 9 but was 3 Indentation
Edited by Raphael Müller