Fix bug: Feature coordinates are stored as strings

scripts/convert_blastp.py

@@ -52,11 +52,11 @@ with open(filename) as f:
             if '% identity' in header:
                 result['target']["percent_identity"] = float(split[header['% identity']])
             if 'q. start' in header and 'q. end' in header:
-                result['query']['start'] = split[header['q. start']]
-                result['query']['end'] = split[header['q. end']]
+                result['query']['start'] = int(split[header['q. start']])
+                result['query']['end'] = int(split[header['q. end']])
             if 's. start' in header and 's. end' in header:
-                result['target']['start'] = split[header['s. start']]
-                result['target']['end'] = split[header['s. end']]
+                result['target']['start'] = int(split[header['s. start']])
+                result['target']['end'] = int(split[header['s. end']])
             if 'evalue' in header:
                 result['target']['evalue'] = float(split[header['evalue']])
             if 'BTOP' in header:

scripts/convert_ghostx.py

@@ -43,13 +43,13 @@ with open(result_filename) as f:
         elif args.acc_split:
             accession = acession.split(args.acc_split)[0]
         result['query'] = {
-                'start': split[6],
-                'end': split[7]
+                'start': int(split[6]),
+                'end': int(split[7])
                 }
         result['target'] = {
                 'dbxref': args.dbxref + ':' + accession,
-                'start': split[8],
-                'end': split[9],
+                'start': int(split[8]),
+                'end': int(split[9]),
                 'evalue': float(split[10]),
                 'percent_identity': float(split[2]),
                 'score': float(split[11])