Add ECF express profile

modules/hmmer_vs_ecfgroups.yaml

+# Module manifest for the blastp against swissprot analysis
+
+# The name of the module. Is needed for the list-analyses option, for custom
+# configurations and custom profiles
+name: 'hmmer_ecfgroups'
+
+# Short description of the analysis
+info: 'hmmscan analysis against ECFexpress groups'
+
+# The name of the script for the analysis step. Must take a --fasta parameter
+analysis:
+    script: 'run_hmmer.py'
+    parameters:
+        database: 'ecfexpress/ECFgroups.hmm'
+        evalue: 1e-10
+    execution:
+        cluster:
+            chunksize: 200
+    container:
+        docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
+        singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
+
+# The name of the result to json converter script. Must take one parameter, the
+# result file from the analysis_script
+converter:
+    script: 'convert_hmmer.py'
+    parameters:
+        dbxref: 'ECF'

modules/hmmer_vs_ecfsubgroups.yaml

+# Module manifest for the blastp against swissprot analysis
+
+# The name of the module. Is needed for the list-analyses option, for custom
+# configurations and custom profiles
+name: 'hmmer_ecfsubgroups'
+
+# Short description of the analysis
+info: 'hmmscan analysis against ECFexpress subgroups'
+
+# The name of the script for the analysis step. Must take a --fasta parameter
+analysis:
+    script: 'run_hmmer.py'
+    parameters:
+        database: 'ecfexpress/ECFsubgroups.hmm'
+        evalue: 1e-10
+    execution:
+        cluster:
+            chunksize: 200
+    container:
+        docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
+        singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
+
+# The name of the result to json converter script. Must take one parameter, the
+# result file from the analysis_script
+converter:
+    script: 'convert_hmmer.py'
+    parameters:
+        dbxref: 'ECF'

profiles/bacteria-ecf.yaml

+name: 'bacteria-ecf'
+info: 'Profile for ecfexpress calculation'
+modules:
+  include_sequence:
+  tmhmm:
+  ghostx_swissprot:
+  hmmer_pfam_a:
+  hmmer_ecfgroups:
+  hmmer_ecfsubgroups: