Commit 542044f8 authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Add ECF express profile

parent f37b7117
# Module manifest for the blastp against swissprot analysis
# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name: 'hmmer_ecfgroups'
# Short description of the analysis
info: 'hmmscan analysis against ECFexpress groups'
# The name of the script for the analysis step. Must take a --fasta parameter
analysis:
script: 'run_hmmer.py'
parameters:
database: 'ecfexpress/ECFgroups.hmm'
evalue: 1e-10
execution:
cluster:
chunksize: 200
container:
docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
# The name of the result to json converter script. Must take one parameter, the
# result file from the analysis_script
converter:
script: 'convert_hmmer.py'
parameters:
dbxref: 'ECF'
# Module manifest for the blastp against swissprot analysis
# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name: 'hmmer_ecfsubgroups'
# Short description of the analysis
info: 'hmmscan analysis against ECFexpress subgroups'
# The name of the script for the analysis step. Must take a --fasta parameter
analysis:
script: 'run_hmmer.py'
parameters:
database: 'ecfexpress/ECFsubgroups.hmm'
evalue: 1e-10
execution:
cluster:
chunksize: 200
container:
docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
# The name of the result to json converter script. Must take one parameter, the
# result file from the analysis_script
converter:
script: 'convert_hmmer.py'
parameters:
dbxref: 'ECF'
name: 'bacteria-ecf'
info: 'Profile for ecfexpress calculation'
modules:
include_sequence:
tmhmm:
ghostx_swissprot:
hmmer_pfam_a:
hmmer_ecfgroups:
hmmer_ecfsubgroups:
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