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9c99ece0

Commit 9c99ece0 authored 6 years ago by Marc

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add "docker" and "singularity" programm arguments to psot; extend scripts and...

add "docker" and "singularity" programm arguments to psot; extend scripts and config files for blastp, ghostx and hmmer

parent c344cdf1

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psot/default_repo/modules/blast_vs_swissprot.yaml 1 addition, 0 deletions

psot/default_repo/modules/blast_vs_swissprot.yaml
psot/default_repo/modules/ghostx_vs_swissprot.yaml 1 addition, 0 deletions

psot/default_repo/modules/ghostx_vs_swissprot.yaml
psot/default_repo/modules/hmmer_vs_PFAM-A.yaml 1 addition, 0 deletions

psot/default_repo/modules/hmmer_vs_PFAM-A.yaml
psot/default_repo/profiles/custom.yaml 5 additions, 0 deletions

psot/default_repo/profiles/custom.yaml
psot/default_repo/profiles/custom2.yaml 9 additions, 0 deletions

psot/default_repo/profiles/custom2.yaml
psot/default_repo/profiles/custom3.yaml 11 additions, 0 deletions

psot/default_repo/profiles/custom3.yaml
psot/default_repo/scripts/run_blastp.py 11 additions, 3 deletions

psot/default_repo/scripts/run_blastp.py
psot/default_repo/scripts/run_ghostx.py 16 additions, 7 deletions

psot/default_repo/scripts/run_ghostx.py
psot/default_repo/scripts/run_hmmer.py 12 additions, 3 deletions

psot/default_repo/scripts/run_hmmer.py
psot/main.py 7 additions, 0 deletions

psot/main.py
psot/nextflow.py 7 additions, 2 deletions

psot/nextflow.py

with 81 additions and 15 deletions

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