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Commit 394696b7 authored by Lukas Jelonek's avatar Lukas Jelonek
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Fix unknown process warnings

parent 203a6bf2
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......@@ -248,7 +248,7 @@ beforeScript_modul_config_template = Template('''
)
beforeScript_norm_config_template = Template('''
withName:normalizing_fasta{
withName:normalize_fasta{
${beforeScript}
}
'''
......@@ -419,9 +419,9 @@ def generate_nextflow_config(execution):
config['beforeScript'] = "beforeScript = 'export PS1=; source " + execution['venv'] + "/bin/activate'"
if execution['fetch_dbxrefs']:
process_names_list = Template('convert_${id}_to_json|${id}_restore_headers_json|retrieve_dbxrefs_for_${id}').substitute(config).split('|')
process_names_list = Template('convert_${id}_to_json|${id}_restore_ids|retrieve_dbxrefs_for_${id}').substitute(config).split('|')
else:
process_names_list = Template('convert_${id}_to_json|${id}_restore_headers_json').substitute(config).split('|')
process_names_list = Template('convert_${id}_to_json|${id}_restore_ids').substitute(config).split('|')
fragments.append(analysis_config_template.substitute(config))
for process in process_names_list:
......
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