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psot
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!1
Targetp
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Targetp
targetp
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develop
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7
Merged
Targetp
hmueller
requested to merge
targetp
into
develop
Nov 30, 2017
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7
Implements TargetP analysis with plant/non-plant options and output conversion to json.
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modules/targetp.yaml
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# Module manifest for the targetp analysis
# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name
:
'
targetp'
# Short description of the analysis
info
:
'
predict
subcellular
peptide
location'
# The configuration of the script for the analysis step.
analysis
:
# script must take a --fasta parameter
script
:
'
run_targetp.py'
# specify additional default configuration here
parameters
:
# The configuration of the script for the json conversion step.
converter
:
# script must take a --result parameter, which is the result from the analysis step
script
:
'
convert_targetp.py'
# specify additional default configuration here
parameters
:
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