Add readme

README.rst

@@ -7,6 +7,7 @@ so that other computer can be able to download the data from there. It's also po
 databases on the working computer and/or in the Cloud.
 
 Supported Databases with associated tools:
+
 * Uniprot-Swissprot [Blast, Ghostx]
 * CARD [Blast, Ghostx]
 * Pfam [hmmer]
@@ -15,13 +16,16 @@ Installation
 ------------
 
 Prerequisites:
+
 * Python (Version >= 3.7)
 * Git
 
 Install for user::
+
     pip install git+https://git.computational.bio.uni-giessen.de/cfankep/psotdb.git
 
 Install for developer::
+
     #checkout repository
     git clone git+https://git.computational.bio.uni-giessen.de/cfankep/psotdb.git
 
@@ -31,10 +35,13 @@ Install for developer::
 
 Using Database Manager
 ----------------------
+
 For the general help use::
+
     dbman --help
 
 Checkout which databases are available::
+
     # in the S3 directory
     dbman list_remote_databases
 
@@ -42,35 +49,46 @@ Checkout which databases are available::
     dbman list_local_databases 
 
 Checkout which databases with associated transformations are available::
+
     dbman list_recipes
 
 Prepare databases::
+
     # check the available optional parameters
     dbman prepare -h
+
     # run the standard preparation
     dbman prepare example/database exemple/tool
 
 Transfer databases from the working computer to s3 Cloud::
+
     # check the available optional parameters
     dbman upload -h
+
     # run the standard transfer
     dbman upload example/database exemple/tool\*
 
 Transfer databases from s3 Cloud to working computer::
+
     # check the available optional parameters
     dbman download -h
+
     # run the standard download
     dbman download example/database exemple/tool\*
 
 Delete undesirable databases::
+
     # from the local directory
     dbman delete example/database example/tool\* local
+
     # from the s3 cloud directory
     dbman delete example/database example/tool\* s3
 
 remplace the standard directory to save the data::
+
     # change local directory with the environment variable
     export DBMAN_DBDIR = example/path
+    
     # change remote directory with the environment variable
     export DBMAN_S3DIR = example/path