upload without tar

download_json.sh

+#!/bin/bash
+REMOTE_FILE=$1
+LOCAL_DATABASE_DIRECTORY=$2
+
+cd $LOCAL_DATABASE_DIRECTORY
+s3cmd get $REMOTE_FILE 
+cd -
\ No newline at end of file

local_databases/dbman_metadata.json

-[]
\ No newline at end of file
+[{"name": "swissprot", "tool": "blast", "version": "2019_06", "created": "2019-07-29"}]
\ No newline at end of file

main.py

@@ -12,7 +12,7 @@ import json
 
 
 def myparser():
-    parser = argparse.ArgumentParser(description='Download, convert and share the data to working computer', prog='PSOT_database_maker')
+    parser = argparse.ArgumentParser(description='Download, convert and share databases to working computer', prog='Database Manager')
 
     subparsers = parser.add_subparsers(title='Subcommands', description='Authorized Subcommands', help='Additional help')
 
@@ -196,7 +196,7 @@ def get_path_local_json(args):
 
 
 def get_path_remote_json(args):
-    return path_maker(get_remote_databases_directory(args), 'dbman_remote_metadata.json.tar.gz')
+    return path_maker(get_remote_databases_directory(args), 'dbman_remote_metadata.json')
 
 
 def get_local_metadata(args):
@@ -217,7 +217,7 @@ def save_local_metadata(args, metaliste):
 
 def get_remote_metadata(args):
     if get_path_remote_json(args) in get_remote_files():
-        subprocess.run(['./download_db.sh', get_path_remote_json(args), get_local_databases_directory(args), 'dbman_remote_metadata.json.tar.gz'])
+        subprocess.run(['./download_json.sh', get_path_remote_json(args), get_local_databases_directory(args)])
         with open(path_maker(get_local_databases_directory(args), 'dbman_remote_metadata.json')) as f:
             metadata = json.load(f)
         os.remove(path_maker(get_local_databases_directory(args), 'dbman_remote_metadata.json'))
@@ -227,10 +227,10 @@ def get_remote_metadata(args):
 
 
 def save_remote_metadata(args, metaliste):
-    with open('dbman_remote_metadata.json', 'w') as f:
+    with open(path_maker(get_local_databases_directory(args),'dbman_remote_metadata.json'), 'w') as f:
         json.dump(metaliste, f)
-    subprocess.run(['./upload_db.sh', './', 'dbman_remote_metadata.json.tar.gz', 'dbman_remote_metadata.json', get_remote_databases_directory(args)])
-    os.remove('dbman_remote_metadata.json')
+    subprocess.run(['./upload_json.sh', get_local_databases_directory(args), 'dbman_remote_metadata.json', get_remote_databases_directory(args)])
+    os.remove(path_maker(get_local_databases_directory(args),'dbman_remote_metadata.json'))
 
 
 def get_remote_filename(args, version):

upload_json.sh

+#!/bin/bash
+LOCAL_DATABASE_DIRECTORY=$1
+LOCAL_FILE=$2
+REMOTE_DATABASE_DIRECTORY=$3
+cd $LOCAL_DATABASE_DIRECTORY
+s3cmd put $LOCAL_FILE $REMOTE_DATABASE_DIRECTORY
+cd -
\ No newline at end of file