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Commit b9e0d40e authored by Julian Kreis's avatar Julian Kreis
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added R-package and libraries

parent b66c3158
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......@@ -34,7 +34,10 @@ RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" >> /etc/apt/sour
sudo DEBIAN_FRONTEND=noninteractive apt-get -o Dpkg::Options::='--force-confdef' -o Dpkg::Options::='--force-confold' -f -q -y install --only-upgrade r-base-core
RUN apt-get -y install libcurl4-openssl-dev && \
sudo apt-get install -y libxml2-dev
# sudo apt-get install -y libxml2-dev
sudo apt-get install -y libgsl0ldbl && \
sudo apt-get install -y libxml++2.6-dev
RUN Rscript -e "install.packages('dplyr', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN Rscript -e "install.packages('tidyr', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
......@@ -44,7 +47,7 @@ RUN Rscript -e "install.packages('ggrepel', repos='http://ftp5.gwdg.de/pub/misc/
RUN Rscript -e "install.packages('gplots', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN Rscript -e "install.packages('VennDiagram', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN Rscript -e "install.packages('XML', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN Rscript -e "install.packages('shiny', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN Rscript -e 'source("http://bioconductor.org/biocLite.R")' -e 'biocLite(c("mygene", "affy", "mzID"), dependencies=T)'
......
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