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jkreis
CLOUD-apostl-galaxy
Commits
b9e0d40e
Commit
b9e0d40e
authored
8 years ago
by
Julian Kreis
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added R-package and libraries
parent
b66c3158
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b9e0d40e
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@@ -34,7 +34,10 @@ RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" >> /etc/apt/sour
sudo
DEBIAN_FRONTEND
=
noninteractive apt-get
-o
Dpkg::Options::
=
'--force-confdef'
-o
Dpkg::Options::
=
'--force-confold'
-f
-q
-y
install
--only-upgrade
r-base-core
RUN
apt-get
-y
install
libcurl4-openssl-dev
&&
\
sudo
apt-get
install
-y
libxml2-dev
# sudo apt-get install -y libxml2-dev
sudo apt-get install -y libgsl0ldbl && \
sudo apt-get install -y libxml++2.6-dev
RUN
Rscript
-e
"install.packages('dplyr', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN
Rscript
-e
"install.packages('tidyr', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
...
...
@@ -44,7 +47,7 @@ RUN Rscript -e "install.packages('ggrepel', repos='http://ftp5.gwdg.de/pub/misc/
RUN
Rscript
-e
"install.packages('gplots', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN
Rscript
-e
"install.packages('VennDiagram', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN
Rscript
-e
"install.packages('XML', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN
Rscript
-e
"install.packages('shiny', repos='http://ftp5.gwdg.de/pub/misc/cran/')"
RUN
Rscript
-e
'source("http://bioconductor.org/biocLite.R")'
-e
'biocLite(c("mygene", "affy", "mzID"), dependencies=T)'
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