Commits · master · Lukas Jelonek / fastqc-pipeline · GitLab

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Jul 07, 2016
- Added test dataset for parallel processing of multiple assemblies · 72589f57
  Lukas Jelonek authored 8 years ago
  
  72589f57
Jul 06, 2016
- Fixed bug and minor cosmetic changes · 66e378af
  Lukas Jelonek authored 8 years ago
  
  66e378af
- Removed unused script · 126fd3d1
  Lukas Jelonek authored 8 years ago
  
  126fd3d1
- Added copy flag to coverage publishing · db78232d
  Lukas Jelonek authored 8 years ago
  
  db78232d
- Added process that publishes the assembled fastas · 1fb887bd
  Lukas Jelonek authored 8 years ago
  
  1fb887bd
- Flattened quast report input channel to process all files in one step · 90a733ab
  Lukas Jelonek authored 8 years ago
  
  90a733ab
- Added tags for some processes · 92b1ba40
  Lukas Jelonek authored 8 years ago
  
  92b1ba40
- Replaced fixed string in assembly fasta with dataset id · ec6e4060
  Lukas Jelonek authored 8 years ago
  
  ec6e4060
- Added quast report step · cb3785ad
  Lukas Jelonek authored 8 years ago
  
  cb3785ad
- Added absolute paths to tools under /vol · 36acd157
  Lukas Jelonek authored 8 years ago
  
  36acd157
- Replaced velvet with spades, implemented contig coverage computation · a54a207d
  Lukas Jelonek authored 8 years ago
  
  a54a207d
Jun 29, 2016
- Added step that maps reads to contigs · 00e9ced5
  Lukas Jelonek authored 8 years ago
  
  00e9ced5
- Added assembly step. Reorganized testdata · 01fc87cd
  Lukas Jelonek authored 8 years ago
  
  01fc87cd
Jun 27, 2016
- Implemented support for paired end datasets · c8bd5418
  Lukas Jelonek authored 8 years ago
  
  c8bd5418
- Added qualitycontrol for trimmed data · b53895d4
  Lukas Jelonek authored 8 years ago
  
  b53895d4
- Added testdata as default for pipeline · 3d1f1f26
  Lukas Jelonek authored 8 years ago
  
  3d1f1f26
- Added trimming step · a865ff3f
  Lukas Jelonek authored 8 years ago
  
  a865ff3f
- added testdata · addb7f5b
  Lukas Jelonek authored 8 years ago
  
  addb7f5b
Jun 15, 2016
- Replaced multiqc call with wrapper script that only executes multiqc on fastqc files · ea48ab52
  Lukas Jelonek authored 8 years ago
  
  ea48ab52
- Added multiqc step and publishing of html reports · 7b4858c9
  Lukas Jelonek authored 8 years ago
  
  7b4858c9
- added config file · e7f3956d
  Lukas Jelonek authored 8 years ago
  
  e7f3956d
- Added process that executes fastqc on one or many fastq files · 46fe17ff
  Lukas Jelonek authored 8 years ago
  
  46fe17ff