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Added Support for longer genomes

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Merged Raphael Müller requested to merge long into master Feb 17, 2021
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The calculation of the number of nucleotides in the reference genome was dependent on the maximum value of Signed Integers. We replace the conversion from String to Int with String to Long, which should be enough for quite some time.

Additionally, results are now written to a file (prefix+results.txt)

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Source branch: long