config.yaml

tools:
    signalp: '/vol/biotools/bin/signalp'
    ghostx: '/vol/biotools/bin/ghostx'

profiles:
    - name: 'fast'
      info: 'Profile that contains tools that give a fast result'
      modules:
          ghostx_swissprot:
          signalp:
              organism: 'euk'
    - name: 'common'
      info: 'Profile that uses commonly used tools'
      modules:
          signalp:
          blastp_swissprot:
          hmmer_pfam_a:
    - name: 'complete'
      info: 'Profile that uses all available tools'
      modules:
          signalp:
          blastp_swissprot:
              alignment:
    - name: 'custom'
      info: 'Define which tools should be run'