Commits · 505abbd04bef8eced8deb6358a1e3caddd2ff3d3 · SOaAS / psot.repository · GitLab

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May 31, 2017
- Added a module that runs hmmscan vs PFAM-A · 505abbd0
  Lukas Jelonek authored 7 years ago
  
  505abbd0
Apr 04, 2017
- Moved alignment option to complete profile · 867e3500
  Lukas Jelonek authored 7 years ago
  
  867e3500
Mar 23, 2017
- Fix bug: psot info throws exceptions, due to data model changes · db0034f9
  Lukas Jelonek authored 7 years ago
  
  db0034f9
Mar 22, 2017
- Implemented live results in a subfolder of the output directory · 290bf108
  Lukas Jelonek authored 7 years ago
  
  290bf108
Mar 09, 2017
- Merge tag '0.1' into develop · 559ac65a
  Lukas Jelonek authored 8 years ago
  
  Initial release
  559ac65a
- Merge branch 'release/0.1' · 63022ed7
  Lukas Jelonek authored 8 years ago
  
  63022ed7
- Add changelog · 28457915
  Lukas Jelonek authored 8 years ago
  
  28457915
- Add license · abdba019
  Lukas Jelonek authored 8 years ago
  
  abdba019
Mar 08, 2017
- Added default execution in tmp directory · 72590042
  Lukas Jelonek authored 8 years ago
  
  72590042
- Added module for ghostx vs swissprot · 100b4c88
  Lukas Jelonek authored 8 years ago
  
  100b4c88
- Made psot script name lowercase · 623c7cd7
  Lukas Jelonek authored 8 years ago
  
  623c7cd7
- Renamed signalp runner script · 55ea433f
  Lukas Jelonek authored 8 years ago
  
  55ea433f
- Added a database configuration parameter to the blast wrapper. Renamed the files. · 222f3972
  Lukas Jelonek authored 8 years ago
  
  222f3972
- Added default configuration for modules and rewrote the profiles collection · 82e52112
  Lukas Jelonek authored 8 years ago
  
  82e52112
Feb 28, 2017
- Renamed identifiers of example data · e3fece82
  Lukas Jelonek authored 8 years ago
  
  e3fece82
- Removed unneeded nextflow script · d47939ae
  Lukas Jelonek authored 8 years ago
  
  d47939ae
- Refactored nextflow code generation and execution into module. Implemented postprocessing · ab785538
  Lukas Jelonek authored 8 years ago
  
  ab785538
- Fixed bug: wrong test. Added verbosity · 326b3e1d
  Lukas Jelonek authored 8 years ago
  
  326b3e1d
- Added scripts to merge and split json documents · 2d7a73c7
  Lukas Jelonek authored 8 years ago
  
  2d7a73c7
- Added support for parameters · eb487842
  Lukas Jelonek authored 8 years ago
  
  eb487842
Feb 27, 2017
- Implemented nextflow script generation and execution · 23f7e3bd
  Lukas Jelonek authored 8 years ago
  
  23f7e3bd
- Moved app config to own branch 'app' · 54e269f0
  Lukas Jelonek authored 8 years ago
  
  54e269f0
- Added --output option to analysis scripts · 5bf47604
  Lukas Jelonek authored 8 years ago
  
  5bf47604
- Removed relative path in config · 43fe9e23
  Lukas Jelonek authored 8 years ago
  
  43fe9e23
- Added --result and --output options to json converter scripts · 15f4a749
  Lukas Jelonek authored 8 years ago
  
  15f4a749
- Added paths to config dictionary · 9945d113
  Lukas Jelonek authored 8 years ago
  
  9945d113
Feb 23, 2017
- [WIP] nextflow script generation · 176b0270
  Lukas Jelonek authored 8 years ago
  
  176b0270
- Added subparsers for analysis and info actions · 6578edd8
  Lukas Jelonek authored 8 years ago
  
  6578edd8
- Added profile definitions · 0d7c6137
  Lukas Jelonek authored 8 years ago
  
  0d7c6137
- Added module manifests · 511becad
  Lukas Jelonek authored 8 years ago
  
  511becad
- Added config module and used it in the module scripts · 349eb1e7
  Lukas Jelonek authored 8 years ago
  
  349eb1e7
Feb 22, 2017
- Added nextflow driver script that runs signalp and blast · 8a98d304
  Lukas Jelonek authored 8 years ago
  
  8a98d304
- Adapted blast json document to the signalp document structure · ded79224
  Lukas Jelonek authored 8 years ago
  
  ded79224
- Removed debugging output · 184e0d46
  Lukas Jelonek authored 8 years ago
  
  184e0d46
- Added blast vs swissprot tool and converter · ca4ffd6a
  Lukas Jelonek authored 8 years ago
  
  ca4ffd6a
- Changed convention for converters. script prefix is now convert · b8878d71
  Lukas Jelonek authored 8 years ago
  
  b8878d71
- Added configuration file for the whole system · d47a4529
  Lukas Jelonek authored 8 years ago
  
  d47a4529
Feb 14, 2017
- Added signalp module · a6cb14bf
  Lukas Jelonek authored 8 years ago
  
  a6cb14bf
- Added example data · 7f09a528
  Lukas Jelonek authored 8 years ago
  
  7f09a528
- Added readme · 4dcde2a9
  Lukas Jelonek authored 8 years ago
  
  4dcde2a9