Commit 493781f4 authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop

parents c8fafcb6 79d1969a
......@@ -32,9 +32,9 @@ with open(filename) as f:
for field in field_index:
if field_index[field] is not None:
if field == "Loc":
results[field.lower()] = loc_dict[split[field_index[field]]]
results['Localization'] = loc_dict[split[field_index[field]]]
else:
results[field.lower()] = float(split[field_index[field]])
results[field] = float(split[field_index[field]])
else:
if line.startswith('Name '):
split = line.split()
......
This diff is collapsed.
#!/bin/bash
set -uexo pipefail
SCRIPT=$(../scripts/run_targetp.py --fasta data/fasta/proteins.fas --output data/targetp/ --organism_group non-plant)
eval "$SCRIPT"
../scripts/convert_targetp.py --result data/targetp/ --output data/targetp/converted.json
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