Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop

scripts/convert_targetp.py

@@ -32,9 +32,9 @@ with open(filename) as f:
                 for field in field_index:
                     if field_index[field] is not None:
                         if field == "Loc":
-                            results[field.lower()] = loc_dict[split[field_index[field]]]
+                            results['Localization'] = loc_dict[split[field_index[field]]]
                         else:
-                            results[field.lower()] = float(split[field_index[field]])
+                            results[field] = float(split[field_index[field]])
         else:
             if line.startswith('Name   '):
                 split = line.split()

tests/execute_targetp_tools.sh

+#!/bin/bash
+set -uexo pipefail
+
+SCRIPT=$(../scripts/run_targetp.py --fasta data/fasta/proteins.fas --output data/targetp/ --organism_group non-plant)
+eval "$SCRIPT"
+
+../scripts/convert_targetp.py --result data/targetp/ --output data/targetp/converted.json