Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
SOaAS
psot.repository
Commits
c5e97033
Commit
c5e97033
authored
Jan 29, 2018
by
Lukas Jelonek
Browse files
Fix bug: replace default fasta file with concrete fasta file
parent
dad7e862
Changes
1
Hide whitespace changes
Inline
Side-by-side
psot/nextflow.py
View file @
c5e97033
...
...
@@ -180,7 +180,7 @@ def generate_nextflow_script(execution):
modules
=
execution
[
'modules'
]
fragments
=
[]
fragments
.
append
(
'''params.fasta = "
example/proteins.fas
"
fragments
.
append
(
'''params.fasta = "
'''
+
execution
[
'fasta'
]
+
'''
"
Channel.fromPath(params.fasta).set{fasta}'''
)
target_channels
=
[
"for_"
+
m
[
'id'
]
for
m
in
modules
]
fragments
.
append
(
'fasta.into{'
+
';'
.
join
(
target_channels
)
+
';}'
)
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment