Commit c5e97033 authored by Lukas Jelonek's avatar Lukas Jelonek
Browse files

Fix bug: replace default fasta file with concrete fasta file

parent dad7e862
......@@ -180,7 +180,7 @@ def generate_nextflow_script(execution):
modules = execution['modules']
fragments = []
fragments.append('''params.fasta = "example/proteins.fas"
fragments.append('''params.fasta = "'''+execution['fasta']+'''"
Channel.fromPath(params.fasta).set{fasta}''')
target_channels = ["for_"+m['id'] for m in modules]
fragments.append('fasta.into{'+';'.join(target_channels)+';}')
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment